DBMI Publications

Poddar A, Chandra N, Ganapathiraju M, Sekar K, Klein-Seetharaman J, Reddy R, Balakrishnan N. Evolutionary insights from suffix array-based genome sequence analysis. J. Biosci. 2007 Aug;32(5):871-81. PubMed PMID: 17914229.
Drake TA, Braun J, Marchevsky A, Kohane IS, Fletcher C, Chueh H, Beckwith B, Berkowicz D, Kuo F, Zeng QT, Balis U, Holzbach A, McMurry A, Gee CE, McDonald CJ, Schadow G, Davis M, Hattab EM, Blevins L, Hook J, Becich MJ, Crowley RS, Taube SE, Berman J; Members of the Shared Pathology Informatics Network.  A system for sharing routine surgical pathology specimens across institutions: the Shared Pathology Informatics Network. Hum Pathol. 2007 Aug;38(8):1212-25. Epub 2007 May 8. PMID: 17490722
Laframboise WA, Scalise D, Stoodley P, Graner SR, Guthrie RD, Magovern JA, Becich MJ. Effect of lean method implementation in the histopathology section of an anatomic pathology laboratory.  J Clin Pathol. 2007 Aug 3; [Epub ahead of print]. PMID: 17675533
Handler SM, Altman RL, Perera S, Hanlon JT, Studenski SA, Saul MI, Fridsma DB. A Systematic Review of the Performance Characteristics of Clinical Event Monitor Signals Used to Detect Adverse Drug Events in the Hospital Setting. Journal of the American Medical Informatics Association. 2007:14(4):451-458.  PMID:17460130   PMCID:PMC2244905
Boyce R, Collins C, Horn J, Kalet I. "Modeling Drug Mechanism Knowledge Using Evidence and Truth Maintenance," IEEE Transactions on Information Technology in Biomedicine, Volume 11(4) 2007, Page(s):386 - 397. PMID: 17674621.
Mohanty SK, Piccoli AL, Devine LJ, Patel AA, Gross WC, Winters SB, Becich MJ, Parwani AV. Synoptic Tool for reporting of Hematological and Lymphoid neoplasms based on World Health Organization classification and College of American Pathologists checklist.  BMC Cancer. 2007 Jul 31;7(1):144 [Epub ahead of print]. PMID: 17672904
Becich MJ. Lessons Learned from the Shared Pathology Informatics Network (SPIN): A Scalable Network for Translational Research and Public Health.  J Am Med Inform Assoc.2007 Jul-Aug;14: 534-535. PBCID: PMC2244892
Patel AA, Gilbertson GR, Showe LC, London JW, Ross E, Ochs MF, Carver J, Lazarus A, Parwani AV, Dhir R, Beck JR, Liebman M, Garcia FU, Prichard J, Wilkerson M, Herberman RB, Becich MJ and the PCABC.  A Novel Cross-Disciplinary Multi-Institute Approach to Translational Cancer Research: Lessons Learned from Pennsylvania Cancer Alliance Bioinformatics Consortium (PCABC). Cancer Informatics 2007:3, 255-274 (2007).  PMID: 19455246 e-pub = http://la-press.com/journals.php?pa=abstract&content_id=272.
Kajdacsy-Balla A, Geynisman JM, Macias V, Setty S, Nanaji NM, Berman JJ, Dobbin K, Melamed J, Kong X, Bosland M, Orenstein J, Bayerl J, Becich MJ, Dhir R, Datta MW; The Cooperative Prostate Cancer Tissue Resource. Practical aspects of planning, building, and interpreting tissue microarrays: The Cooperative Prostate Cancer Tissue Resource experience.  J Mol Histol. 2007 May;38(2):113-121. Epub 2007 Feb 21. PMID: 17318343
Laframboise WA, Scalise D, Stoodley P, Graner SR, Guthrie RD, Magovern JA, Becich MJ.  Cardiac fibroblasts influence cardiomyocyte phenotype in vitro.  Am J Physiol Cell Physiol. 2007 May;292(5):C1799-1808. PMID: 17229813
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