DBMI Publications

Suresh S, Saladino RA, Fromkin J, Heineman E, McGinn T, Richichi R, Berger RP. Integration of physical abuse clinical decision support into the electronic health record at a Tertiary Care Children's Hospital. Journal of the American Medical Informatics Association, 2018; 25(7), 833-840. doi: 10.1093/jamia/ocy025.
Pascal LE, Wang Y, Zhong M, Wang D, Chakka AB, Yang Z, Li F, Song Q, Rigatti LH, Chaparala S, Chandran U, Parwani AV, Wang Z. EAF2 and p53 Co-Regulate STAT3 Activation in Prostate Cancer. Neoplasia. 2018 Apr;20(4):351-363. doi: 10.1016/j.neo.2018.01.011. Epub 2018 Mar 6. PMID: 29518696. PMCID: PMC5909677.
Luthra S, Chandran U, Diergaarde B, Becich M, Lee AV, Neumann CA. Expression of reactive species related genes is associated with patient survival in luminal B breast cancer. Free Radic Biol Med. 2018 Mar 12. pii: S0891-5849(18)30114-X. doi: 10.1016/j.freeradbiomed.2018.03.011. [Epub ahead of print]. PMID: 2954507.
Ding MQ, Chen L, Cooper GF, Young JD, Lu X. Precision Oncology Beyond Targeted Therapy: Combining Omics Data with Machine Learning Matches the Majority of Cancer Cells to Effective Therapeutics. Mol Cancer Res. 2018 Feb;16(2):269-278. doi: 10.1158/1541-7786.MCR-17-0378. Epub 2017 Nov 13. PMID: 29133589. PMCID: PMC5821274.
Zeng Z, Espino S, Roy A, Li X, Khan SA, Clare SE, Jiang X, Neapolitan R, Luo Y. Using natural language processing and machine learning to identify breast cancer local recurrence. BMC Bioinformatics. 2018 Dec 28:19(Suppl 17):498. doi: 10.1186/s12859-018-2466-x. PMID: 30591037. PMCID: PMC6309052.
King AJ, Cooper GF, Hochheiser H, Clermont G, Hausrecht M, Visweswaran S. Using Machine Learning to Predict the Information Seeking Behavior of Clinicians Using an Electronic Medical Record System. AMIA Annual Symp Proc. 2018 Dec 5;2018:673-682. eCollection 2018. PubMed PMID: 30815109. PMCID: PMC6371238.
Aliberti P, Sethi R, Belgorosky A, Chandran UR, Plant TM, Walker WH. Gonadotrophin-mediated miRNA expression in testis at onset of puberty in rhesus monkey; predictions on regulation of thyroid hormone activity and DLK1-DIO3 locus. Mol Hum Reprod. 2018 Dec 24. doi: 10.1093/molehr/gay054. [Epub ahead of print]. PMID: 30290698.
McKenzie KA, El Ters M, Torres VE, Harris PC, Chapman AB, Mrug M, Rabhari-Oskoui FF, Bae KT, Landsittel DP, Bennett WM, Yu ASL, Mahnken JD. Relationship between caffeine intake and autosomal dominant polycystic kidney disease progression: a retrospective analysis using the CRISP cohort. BMC Nephrol. 2018 Dec 27;19(1):378. doi: 10.1186/s12882-018-1182-0. PMID: 30591038. PMCID: PMC6307167.
Boyce RD, Ragueneau-Majlessi I, Yu J, Tay-Sontheimer J, Kinsella C, Chou E, Brochhausen M, Judkins J, Guffort BT, Pinkleton BE, Cooney R, Paine MF, McCune JS. Developing User Personas to Aid in the Design of a User-Centered Natural Product-Drug Interaction Information Resource for Researchers. AMIA Annu Symp Proc. 2018 Dec 5;2018:279-287. eCollection 2018. PMID: 30815066. PMCID: PMC6371317.
Linkov F, Silverstein JC, Davis M, Crocker B, Hao D, Schneider A, Schwenk M, Winters S, Zelnis J, Lee AV, Becich MJ. Integration of Cancer Registry Data into the Text Information Extractio System: Leveraging the Structured Data Import Tool. J Pathol Inform. 2018 Dec 24;9:47. doi: 10.4103/jpi.jpi_38_18. eCollection 2018. PMID: 30662793. PMCID: PMC6319041.
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