DBMI Publications

Lavu S, Vaughan LE, Senum SR, Kline TL, Chapman AB, Perrone RD, Mrug M, Braun WE, Steinman TI, Rahbari-Oskoui FE, Brosnahan GM, Bae KT, Landsittel D, Chebib FT, Yu ASL, Torres VE, the HALT PKD and CRISP Student Investigators, Harris PC.  The value of genotypic and imaging information to predict functional and structural outcomes in ADPKD. JMI Insight, 2020 Aug 6;5(15):138724. doi: 10.1172/jci.insight.138724.  PMID: 32634120
Andrews B, Spirtes P, Cooper GF.  On the Completeness of Causal Discovery in the Presence of Latent Confounding with Tiered Background Knowledge.  Proceedings of Machine Learning Research JMLR:108.
Li Li, Ling Lin, Jamunarani Veeraraghavan, Yiheng Hu, Xian Wan, Sanghoon Lee, Ying Tan, Rachel Schiff, Xiaosong Wang. Therapeutic role of recurrent ESR1CCDC170 gene fusions in breast cancer endocrine resistance. Breast Cancer Research, 2020 Aug 8; 22(1):84. doi: 10.1186/s1302-3.  PMID: 32770139
Liu J, Ma X, Cooper G, Lu X. Explicit representation of protein activity states significantly improves causal discovery of protein phosphorylation networks. BMC Bioinformatics. (2020) Sep 17;21(Suppl 13):379. doi: 10.1186/s12859-020-03676-2. PMID: 32938361 PMCID: PMC7496209
Fattaneh Jabbari, Lisa C. Villaruz, Mike Davis, Gregory F. Cooper.  Lung Cancer Survival Prediction Using Instance-Specific Bayesian Networks. In: Michalowski M., Moskovitch R. (eds) Artificial Intelligence in Medicine. AIME 2020. Lecture Notes in Computer Science, vol 12299. Springer, Cham. https://doi.org/10.1007/978-3-030-59137-3_14.
Trivedi G, Dadashzadh ER, Handzel RM, Chapman WW, Visweswaran S, Hochheiser H. Interactive NLP in Clinical Care: Identifying Incidental Findings in Radiology Reports. Appl Clin Inform 2019;10:4, 655–69. DOI:https://www.thieme-connect.de/products/ejournals/abstract/10.1055/s-0039-1695791 PMID: 31486057; PMCID: PMC6727024 [Available on 2020-08-01]
M. Minata, A. Audia, J. Shi, S. Lu, J. Bernstock, M. Pavlyukov, A. Das, S.Kim, Y. Shin, Y. Lee, H. Koo, K. Snigdha, I. Waghmare, X. Guo, A. Mohyeldin, D. Gallego-Perez, J. Wang, D. Chen, P. Cheng, F. Mukheef, M. Contreras, J.Reyes, B. Vaillant, E.Sulman, S. Cheng, J. Markert, B.Tannous, X. Lu, M. Kango-Singh, L J. Lee, D. Nam, I. Nakano, K.Bhat. Phenotypic Plasticity of Invasive Edge Glioma Stem-like Cells in Response to Ionizing Radiation. Cell Reports; 2019; 26(7); PMID:30759398.​
X. Fan, S. Zhang *, S. Zhang, K. Zhu, S. Lu*. Prediction of lncRNA-disease associations by integrating diverse heterogeneous information sources with RWR algorithm and positive pointwise mutual information. BMC Bioinformatics; 2019; 20(87); PMID: 30782113.​
X. Wang, M. O'Brien, J. Yu, L. Liang, Q. Zhang, S. Lu, X. An, J. McDyer, R. Mallampalli. Prolonged cold-ischemia induces necroptotic cell death after experimental  lung transplantation. American Journal of Respiratory Cell and Molecular Biology; 2019; PMID: 30742487.​
Mohammadamin Tajgardoon, Malarkodi J. Samayamuthu, Luca Calzoni, Shyam Visweswaran.  Patient-Specific Explanations for Predictions of Clinical Outcomes.  Applied Clinical Informatics (ACI) Journal.  2019; 03(02): e88-e97. DOI: 10.1055/s-0039-1697907.