DBMI Publications

Luthra S, Chandran U, Diergaarde B, Becich M, Lee AV, Neumann CA. Expression of reactive species related genes is associated with patient survival in luminal B breast cancer. Free Radic Biol Med. 2018 Mar 12. pii: S0891-5849(18)30114-X. doi: 10.1016/j.freeradbiomed.2018.03.011. [Epub ahead of print]. PMID: 2954507.
Ding MQ, Chen L, Cooper GF, Young JD, Lu X. Precision Oncology Beyond Targeted Therapy: Combining Omics Data with Machine Learning Matches the Majority of Cancer Cells to Effective Therapeutics. Mol Cancer Res. 2018 Feb;16(2):269-278. doi: 10.1158/1541-7786.MCR-17-0378. Epub 2017 Nov 13. PMID: 29133589. PMCID: PMC5821274.
McKenzie KA, El Ters M, Torres VE, Harris PC, Chapman AB, Mrug M, Rabhari-Oskoui FF, Bae KT, Landsittel DP, Bennett WM, Yu ASL, Mahnken JD. Relationship between caffeine intake and autosomal dominant polycystic kidney disease progression: a retrospective analysis using the CRISP cohort. BMC Nephrol. 2018 Dec 27;19(1):378. doi: 10.1186/s12882-018-1182-0. PMID: 30591038. PMCID: PMC6307167.
Boyce RD, Ragueneau-Majlessi I, Yu J, Tay-Sontheimer J, Kinsella C, Chou E, Brochhausen M, Judkins J, Guffort BT, Pinkleton BE, Cooney R, Paine MF, McCune JS. Developing User Personas to Aid in the Design of a User-Centered Natural Product-Drug Interaction Information Resource for Researchers. AMIA Annu Symp Proc. 2018 Dec 5;2018:279-287. eCollection 2018. PMID: 30815066. PMCID: PMC6371317.
Aliberti P, Sethi R, Belgorosky A, Chandran UR, Plant TM, Walker WH. Gonadotrophin-mediated miRNA expression in testis at onset of puberty in rhesus monkey; predictions on regulation of thyroid hormone activity and DLK1-DIO3 locus. Mol Hum Reprod. 2018 Dec 24. doi: 10.1093/molehr/gay054. [Epub ahead of print]. PMID: 30290698.
Zeng Z, Espino S, Roy A, Li X, Khan SA, Clare SE, Jiang X, Neapolitan R, Luo Y. Using natural language processing and machine learning to identify breast cancer local recurrence. BMC Bioinformatics. 2018 Dec 28:19(Suppl 17):498. doi: 10.1186/s12859-018-2466-x. PMID: 30591037. PMCID: PMC6309052.
Linkov F, Silverstein JC, Davis M, Crocker B, Hao D, Schneider A, Schwenk M, Winters S, Zelnis J, Lee AV, Becich MJ. Integration of Cancer Registry Data into the Text Information Extractio System: Leveraging the Structured Data Import Tool. J Pathol Inform. 2018 Dec 24;9:47. doi: 10.4103/jpi.jpi_38_18. eCollection 2018. PMID: 30662793. PMCID: PMC6319041.
Wright ES, Baum DA (2018). Exclusivity offers a sound yet practical species criterion for bacteria despite abundant gene flow. BMC Genomics. 2018 Oct 3;19(1):724. doi: 10.1186/s12864-018-5099-6. PMID: 30285620. PMCID: PMC6171291.https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6171291/
Huisman, SMH, Mahfouz A, Batmanghelich NK, Lelieveldt BPF, Reinders MJT on behalf of for the Alzheimer's Disease Neuroimaging Initiative. A structural equation model for imaging genetics using spatial transcriptomics. Brain Inf. (2018) 5:13. PMID: 30390165. doi: https://doi.org/10.1186/s40708-018-0091-0.
Ogoe HA, Asamani JA, Hochheiser H, Douglas GP. Assessing Ghana's eHealth Workforce: implications for planning and training. Human Resources for Health. 2018 Nov 27;16(1):65. doi: https://doi.org/10.1186/s12960-018-0330-8. PMID: 30482223. PMCID: PMC6260724.
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