DBMI Publications

Ding MQ, Chen L, Cooper GF, Young JD, Lu X. Precision Oncology Beyond Targeted Therapy: Combining Omics Data with Machine Learning Matches the Majority of Cancer Cells to Effective Therapeutics. Mol Cancer Res. 2018 Feb;16(2):269-278. doi: 10.1158/1541-7786.MCR-17-0378. Epub 2017 Nov 13. PMID: 29133589. PMCID: PMC5821274.
Zeng Z, Espino S, Roy A, Li X, Khan SA, Clare SE, Jiang X, Neapolitan R, Luo Y. Using natural language processing and machine learning to identify breast cancer local recurrence. BMC Bioinformatics. 2018 Dec 28:19(Suppl 17):498. doi: 10.1186/s12859-018-2466-x. PMID: 30591037. PMCID: PMC6309052.
Wright ES, Baum DA (2018). Exclusivity offers a sound yet practical species criterion for bacteria despite abundant gene flow. BMC Genomics. 2018 Oct 3;19(1):724. doi: 10.1186/s12864-018-5099-6. PMID: 30285620. PMCID: PMC6171291.https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6171291/
Aliberti P, Sethi R, Belgorosky A, Chandran UR, Plant TM, Walker WH. Gonadotrophin-mediated miRNA expression in testis at onset of puberty in rhesus monkey; predictions on regulation of thyroid hormone activity and DLK1-DIO3 locus. Mol Hum Reprod. 2018 Dec 24. doi: 10.1093/molehr/gay054. [Epub ahead of print]. PMID: 30290698.
Huisman, SMH, Mahfouz A, Batmanghelich NK, Lelieveldt BPF, Reinders MJT on behalf of for the Alzheimer's Disease Neuroimaging Initiative. A structural equation model for imaging genetics using spatial transcriptomics. Brain Inf. (2018) 5:13. PMID: 30390165. doi: https://doi.org/10.1186/s40708-018-0091-0.
Ogoe HA, Asamani JA, Hochheiser H, Douglas GP. Assessing Ghana's eHealth Workforce: implications for planning and training. Human Resources for Health. 2018 Nov 27;16(1):65. doi: https://doi.org/10.1186/s12960-018-0330-8. PMID: 30482223. PMCID: PMC6260724.
King AJ, Cooper GF, Hochheiser H, Clermont G, Hauskrecht M, Visweswaran S. Using machine learning to predict the information seeking behavior of clinicians using an electronic medical record. Proceedings of the Symposium on the American Medical Informatics Association. November 2018.  
Jin Q, Dhingra B, Cohen WW, Lu X. Attention MeSH: Simple, Effective and Interpretable Automatic MeSH Indexer. 
Wright, ES, & Vetsigian KH (2018). Stochastic exits from dormancy give rise to heavy-tailed distributions of descendants in bacterial populations. bioRxiv. http://doi.org/10.1101/246629
Aboutalib SS, Mohamed AA, Berg WA, Zuley ML, Sumkin JH, and Wu S, "Deep Learning to Distinguish Recalled but Benign Mammography Images in Breast Cancer Screening," Clinical Cancer Research, Oct 2018.  http://clincancerres.aacrjournals.org/content/early/2018/09/26/1078-0432.CCR-18-1115      
^