DBMI Publications

Zhou Yuan, Sean Finan, Jeremy Warner, Guergana Savova, Harry Hochheiser. Interactive Exploration of Longitudinal Cancer Patient Histories Extracted from Clinical Text. JCO Cancer Clinical Informatics  May 2020 DOI: 10.1200/CCI.19.00115 PMID: 32383981 PMCID In progress
Boone DN, Warburton A, Som S, Lee AV. SNHG7 is a IncRNA oncogene controlled by Insulin-like Growth Factor signaling through a negative feedback loop to tightly regulate proliferation.  Scientific Reports 2020; 22 May 2020. Doi: 10.1038/s41598-020-65109-7 PMID: 3244795 PMCID: PMC7244715
Jenna Schabdach, Rafael Ceschin, Vince K. Lee, Vincent Schmithorst, Ashok Panigrahy. A Series Registration Framework to Recover Resting-State Functional Magnetic Resonance Data Degraded By Motion. AMIA Jt Summits Transl Sci Proc. 2020 May 30;2020:569-578. eCollection 202. PMID: 32477679
Wang LF, Li Y, Landsittel DP, Reis SE, Levesque MC, Jones DM, Gartland R, Avolio J, Shoushtari A, Qi Z, Dezfulian C, Moreland LW, Liang KP. Identifying Vulnerable Plaque in Rheumatoid Arthritis Using Novel Microbubble Contrast-Enhanced Carotid Ultrasonography and Serum Biomarkers.  Journal of Diagnostic Medical Sonography 27 May 2020. https://doi.org/10.1177/8756479320922512
Sanghoon Lee, Yiheng Hu, Suet Kee Loo, Yang Tan, Rohit Bhargava, Michael T. Lewis, Xiaosong Wang. Landscape analysis of adjacent gene rearrangements reveals BCL2L14-ETV6 gene fusions in more aggressive triple-negative breast cancer. PNAS, 2020; 117(18):9912-9921. PMCID: 32321829
Yu K, Visweswaran S, Batmanghelich K.  Semi-Supervised Hierarchical Drug Embedding in Hyperbolic Space.  arXiv 1 June 2020. arXiv.org.  arXiv:2006.00986
Birer-Williams C, Gufford BT, Cho E, Alilio M, VanAlstine S, Morley RE, McCune JS, Paine MF, Boyce RD.  A New Data Repository for Pharmacokinetic Natural Product-Drug Interactions: from Chemical Characterization to Clinical Studies. Drug Metabolism and Disposition.  Drug Metabolism and Disposition 2020 Jun 29;DMD-AR-2020-000054. doi: 10.1124/dmd.120.000054. PMID: 32601103
Tariq I Salim,  Leah C Nestlerode, Erin L Lucatorto, Tamara L Wasserman, Hassieb A Din, Douglas P Landsittel, Amit D Tevar, Jonas T Johnson, Andres Duarte-Rojo, Michael A Dunn. Frailty as Tested by Gait Speed Is a Risk Factor for Liver Transplant Respiratory Complications.  Am J Gastroenterol. 2020 Jun;115(6):859-866. doi: 10.14309/ajg.0000000000000609 PMID: 32235146  
Wang Z, Pascal LE, Chandran UR, Chaparala S, Lv S, Ding H, Qi L, Wang Z.  ELL2 Is Required for the Growth and Survival of AR-Negative Prostate Cancer Cells.  Cancer Management and Research 2020 Jun 10;12:4411-4427. doi: 10.2147/CMAR.S248854. PMID: 32606936 PMCID:  PMC7294050
Kevin Louis, Camila Macedo, Elodie Bailly, Louis Lau, Bala Ramaswami, Marilyn Marrari, Douglas Landsittel, Alexander Chang, Uma Chandran, Paul Fadakar, Masaki Yamada, Geetha Chalasani, Parmjeet Randhawa, Adriana Zeevi, Harinder Singh, Carmen Lefaucheur, Diana Metes. Coordinated Circulating T Follicular Helper and Activated B Cell Responses Underlie the Onset of Antibody-Mediated Rejection in Kidney Transplantation.  Journal of the American Society of Nephrology, 2020 Jul 28;ASN.2020030320.  doi: 10.1681/ASN.2020030320  
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