DBMI Publications

J. L. Wisnowski, R. C. Ceschin, S. Y. Choi, V. J. Schmithorst, M. J. Painter, M. D. Nelson, S. Blüml, and A. Panigrahy, “Reduced thalamic volume in preterm infants is associated with abnormal white matter metabolism independent of injury.,” Neuroradiology, Feb. 2015. PMID: 25666231 PMCID: PMC4405472 DOI: 10.1007/s00234-015-1495-7
R. Ceschin, A. Panigrahy, and V. Gopalakrishnan, “Sfdm: Open-source software for temporal analysis and visualization of brain tumor diffusion mr using serial functional diffusion mapping,” Cancer Inform., vol. 14, pp. 1–9, 2015. PMID: 25673970 PMCID: PMC4315050 DOI: 10.4137/CIN.S17293
Neapolitan RE, Jiang X. Study of integrated heterogeneous data reveals prognostic power of gene expression for breast cancer survival. PLoS ONE. 2015; 10 (2): DOI: 10.1371/journal.pone.0117658. PMID: 25723490. PMCID: PMC4344205.
Naeini MP, Cooper GF, Hauskrecht M. Obtaining well calibrated probabilities using Bayesian binning. In: Proceedings of the Conference of the Association for the Advancement of Artificial Intelligence (2015) Jan;2015:2901-2907. PMID: 25927013 PMC4410090.
Kevin McDade, Uma Chandran, Roger Day.  Improving Cancer Gene Expression Data Quality through a TCGA Data-Driven Evaluation of Identifier Filtering.  Cancer Informatics 2015 Dec 16;14:149-161.  DOI: 10.4137/CIN.S33076
Handen A, Ganapthiraju MK. LENS: web-based lens for enrichment and network studies of human proteins. BMC Medical Genomics. 2015;8(Suppl 4):S2. doi:10.1186/1755-8794-8-S4-S2.  
Roth A, Subramanian S, Ganapathiraju MK. Towards extracting supporting information about predicted protein-protein interactions. IEEE/ACM Trans Comput Biol Bioinform. 2015 Dec 7. [Epub ahead of print] PubMed PMID: 26672046.  
Jiang X, Jao J, Neapolitan RE. Learning predictive interactions using information gain and Bayesian network scoring. PLoS ONE. 2015; 10(12): e0143247. doi:10.1371/journal.pone.0143247. PMCID: PMC4666609.
McDade KK, Chandran U, Day RS. Improving Cancer Gene Expression Data Quality through a TCGA Data-Driven Evaluation of Identifier Filtering. Cancer Inform. 2015 Dec 16;14:149-61. doi: 10.4137/CIN.S33076. eCollection 2015. PMID: 26715829. PMCID: PMC4686346.
López Pineda A, Ye Y, Visweswaran S, Cooper GF, Wagner MM, Tsui FR. Comparison of Machine Learning Classifiers for Influenza Detection from Emergency Department Free-text Reports. J Biomed Inform. 2015 Dec;58:60-69. doi: 10.1016/j.jbi.2015.08.019. Epub 2015 Sep 16. PMID: 26385375. PMCID: PMC4684714.
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