DBMI Publications

Pineda AL, Ogoe HA, Balasubramanian JB, Rangel Escareño C, Visweswaran S, Herman JG, Gopalakrishnan V. On Predicting lung cancer subtypes using 'omic' data from tumor and tumor-adjacent histologically-normal tissue. BMC Cancer. 2016 Mar 4;16:184. doi: 10.1186/s12885-016-2223-3. PMID:  26944944  PMCID:  PMC4778315  DOI: 10.1186/s12885-016-2223-3.
Fisher A, Herbert MI, Douglas GP. Understanding the dispensary workflow at the Birmingham Free Clinic: A proposed framework for an informatics intervention. BMC Health Serv Res. 2016 Feb 19; 16:69. PMCID: PMC4759722. doi: 10.1186/s12913-016-1308-7
Batmanghelich N, Dalca A, Quon G, Sabuncu M, Golland P. Probabilistic Modeling of Imaging, Genetics and the Diagnosis. IEEE Transactions on Medical Imaging (TMI), pp 1765-1779, 2016. PMID: 26886973 DOI: 10.1109/TMI.2016.2527784
Romagnoli KM, Boyce RD, Empey PE, Adams S, Hochheiser H. Bringing clinical pharmacogenomics information to pharmacists: A qualitative study of information needs and resource requirements. Int J Med Inform. 2016 Feb;86:54-61. doi: 10.1016/j.ijmedinf.2015.11.015. Epub 2015 Nov 30. PMID: 26725696. PMCID: PMC4720137.
Naeini Pakdaman M, Cooper GF. Binary classifier calibration using an ensemble of near isotonic regression models. In: Proceedings of the IEEE International Conference on Data Mining (2016) Dec;2016:360-369.  doi: 10.1109/ICDM.2016.0047  PMID: 28316511 PMCID: PMC5351887
Thurston RC, Chang Y, Mitchell EB, Jennings JR, Landsittel DP, Santoro N, von Känel R, Matthews KA. Menopausal Hot Flashes and Carotid Intima Media Thickness Among Midlife Women. Stroke, 2016;47(12), 2910-2915. PMID: 27834746 PMCID: PMC5134903 [Available on 2017-12-01] DOI: 10.1161/STROKEAHA.116.014674
Dunn M, Josbeno D, Sturdevant M, Rachakonda V, Ganesh S, Schmotzer A, Kallenborn E, Behari J, Landsittel D, DiMartini A, Delitto A. Frailty as tested by gait speed is an independent risk factor for cirrhosis complications that require hospitalization. American Journal of Gastroenterology. 2016;111(12):1768-1775.  PMID: 27575708  DOI: 10.1038/ajg.2016.336
Huser V, DeFalco F, Schuemie M, Ryan P, Shang N, Velez M, Park RW, Boyce RD, Duke J, Khare R, Utidjian L, Bailey C. (2016) "Multisite Evaluation of a Data Quality Tool for Patient-Level Clinical Datasets," eGEMs (Generating Evidence & Methods to improve patient outcomes): Vol. 4: Iss. 1, Article 24. DOI: http://dx.doi.org/10.13063/2327-9214.1239
Torbati ME, Mitreva M, Gopalakrishnan V. Application of Taxonomic Modeling to Microbiota Data Mining for Detection of Helminth Infection in Global Populations.  2016 Dec;1(3). pii: 19. doi: 10.3390/data1030019. Epub 2016 Dec 13.    PMID: 28239609  PMCID: PMC5325162  DOI: 10.3390/data1030019  
Wright ES, Vetsigian KH. Quality filtering of Illumina index reads mitigates sample cross-talk. BMC Genomics. 2016 Nov 4;17(1):876. doi: 10.1186/s12864-016-3217-x. PMID: 27814679. PMCID: PMC5097354.
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