DBMI Publications

Cai C, Cooper GF, Lu KN, Ma X, Xu S, Zhao Z, Chen X, Xue Y, Lee AV, Clark N, Chen V, Lu S, Chen L, Hochheiser HS, Jiang X, Wang QJ, Lu X.  Systematic discovery of the functional impact of somatic genome alterations in individual tumors through tumor-specific causal inference. PLoS Computational Biology. Published online July 5, 2019. doi: 10.137/journal,pcbi.1007088.  PMID: 31276486
Warner JL, Dymshyts D, Reich CG, Gurley MJ, Hochheiser H, Moldwin ZH, Belenkaya R,  Williams AE, Yang PC. HemOnc: A New Standard Vocabulary for Chemotherapy Regimen Representation in the OMOP Common Data Model. J Biomed Inform. 2019 Jun 22. doi: 10.1016/j.jbi.2019.103239 PMID:31238109; PMCID: PMC6697579 [Available on 2020-08-01].
Hayek SS, Landsittel DP, Wei C, Zeier M, Yu ASL, Torres VE, Roth S, Pao CS, Reiser J. Soluble Urokinase Plasminogen Activator Receptor and Decline in Kidney Function in Autosomal Dominant Polycystic Kidney Disease. J Am Soc Nephrol. 2019 Jun 6. doi: 10.1681/ASN.2018121227. [Epub ahead of print] PubMed PMID: 31171572.
Moiseeva NT, Yin Y, Calderon MJ, Qian C, Schamus-Haynes S, Sugitani N, Osmanbeyoglu HU, Rothenberg E, Watkins SC, Bakkenist CJ. An ATR and CHK1 kinase signaling mechanism that limits origin firing during unperturbed DNA replication. Proc Natl Acad Sci U S A. 2019 Jun 17. pii: 201903418. doi: 10.1073/pnas.1903418116. [Epub ahead of print] PubMed PMID: 31209037.
Liang L, Chen V, Zhu K, Fan X, Lu X, Lu S. Integrating data and knowledge to identify functional modules of genes: a multilayer approach. BMC Bioinformatics. 2019 May 2;20(1):225. doi: 10.1186/s12859-019-2800-y. PubMed PMID: 31046665. 
Seymour CW, Kennedy JN, Wang S, Chang CH, Elliott CF, Xu Z, Berry S, Clermont G, Cooper G, Gomez H, Huang DT, Kellum JA, Mi Q, Opal SM, Talisa V, van der Poll T, Visweswaran S, Vodovotz Y, Weiss JC, Yealy DM, Yende S, Angus DC. Derivation, Validation, and Potential Treatment Implications of Novel Clinical Phenotypes for Sepsis. Journal of the American Medical Association ( 2019). doi:10.1001/jama.2019.5791. PMID: 31104070 PMCID: PMC6537818
Birer C, Wright ES. Capturing the complex interplay between drugs and the intestinal microbiome. Clin Pharmacol Ther. 2019 May 18. doi: 10.1002/cpt.1505. [Epub ahead of print] PubMed PMID: 31102465. 
Trivedi G, Hong C, Dadashzadeh ER, Handzel RM, Hochheiser H, Visweswaran S. Identifying incidental findings from radiology reports of trauma patients: An evaluation of automated feature representation methods. International Journal of Medical Informatics. 2019 Sept 129; 81-7. DOI: 10.1016/j.ijmedinf.2019.05.021 PMID:31445293 PMCID: PMC 6717529
Bae KT, Shen C, Landsittel DP, Zhao W, Wu Z, Tao C, Chapman AB, Torres VE, Yu ASL, Mrug M, Bennett B, Flessner MF, Harris PC. Growth pattern of kidney cyst number and volume in autosomal dominant polycystic kidney disease. Clin J Am Soc Nephrol. 2019  Jun 7;14(6):823-833. doi: 10.2215/CJN.10360818. Epub 2019 May 14. PubMed PMID: 31088850.
Butterfield LH, Vujanovic L, Santos PM, Maurer DM, Gambotto A, Lohr J, Li C, Waldman J, Chandran U, Lin Y, Lin H, Tawbi HA, Tarhini AA, Kirkwood JM. Multiple antigen-engineered DC vaccines with or without IFNα to promote antitumor immunity in melanoma. J Immunother Cancer. 2019 Apr 24;7(1):113. doi: 10.1186/s40425-019-0552-x. PubMed PMID: 31014399.
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