Vanathi Gopalakrishnan, PhD

Gopalakrishnan V, Lustgarten JL, Visweswaran S, Cooper GF. Bayesian rule learning for biomedical data mining. Bioinformatics 26 (2010) 668-675. Doi:10.1093/bioinformatics/btq005.  PMID: 20080512PMC2852212.

Ryberg, H., An, J., Darko, S, Lustgarten, J.L., Jaffa, M.,  Gopalakrishnan, V.,  Lacomis, D, Cudkowicz, M, E., Bowser, R. Discovery and Verification of Amyotrophic Lateral Sclerosis Biomarkers by Proteomics. Muscle & nerve. 2010;42(1):104-11. PMID: 20583124

Bigbee, W.L., Gopalakrishnan, V., Dacic, .S., Hauskrecht, M., Weissfeld, J.L., Wilson, D.O., Siegfried, J.M., Lokshin, A.E. A Multiplexed Serum Biomarker Immunoassay Panel Discriminates Clinical Lung Cancer Patients from Cancer-Free High-Risk Subjects in a CT-Screened Cohort. AACR 2010. Late Breaking Abstract in AACR  2010 Proceedings.

Lustgarten JL, Visweswaran S, Hogan WR, Gopalakrishnan V. Knowledge Based Variable Selection for Learning Rules from Proteomic Data. BMC Bioinformatics. 2009 Sep 17;10 Suppl 9:S16. PMID: 19761570 PMCID: PMC2745687.

Lustgarten JL, Gopalakrishnan V, Visweswaran S. Measuring stability of feature selection in biomedical datasets. In: Proceedings of the Fall Symposium of the American Medical Informatics Association (Nov 2009). 406-10. PMID: 20351889 PMCID: PMC2815476

Kolli, V. S. K., Seth, B., Weaver, L., Lustgarten, J. L., Gopalakrishnan, V., Malehorn, D.,  Bigbee, B, Mural, R. J., Shriver, C.D. MALDI-TOF Profiling of Breast Cancer Sera for Pattern Analysis. Human Proteome Organization HUPO 2009  Proceedings.

Ranganathan, S., Williams, E., Ganchev, P., Gopalakrishnan, V., Urbinelli, L., Newhall, K., Cudkowicz, M.E., Brown, R.H. Jr., Bowser, R. Proteomic Profiling of Cerebrospinal Fluid Identifies Biomarkers for Amyotrophic Lateral Sclerosis, J Neurochem. 2005 Dec;95(5):1461-71. PMID: 16313519 PMCID: PMC1540444. (Cited 170 times as per google scholar on 10/17/2014).

Lu, X., Zhai, C., Gopalakrishnan, V., and Buchanan, B.G. (2004) Automatic annotation of protein motif function with Gene Ontology terms.  BMC Bioinformatics 5:122. PMID: 15345032

Gopalakrishnan, V., Livingston, G., Hennessy, D., Buchanan, B., Rosenberg, J.M. Machine-Learning Techniques for Macromolecular Crystallization Data, Acta Crystallogr D Biol Crystallogr 60 (2004)1705-1716.  PMID:15388916

Gopalakrishnan V, Buchanan BG, Rosenberg JM. A Simple Simulator of Protein Crystallization, Journal of Applied Crystallography 35(6) (2002) 727-733.