Madhavi Ganapathiraju, PhD

Thahir M, Sharma T, Ganapathiraju MK. An efficient heuristic method for active feature acquisition and its application to protein-protein interaction prediction. BMC Proc. 2012 Nov 13;6 Suppl 7:S2. doi: 10.1186/1753-6561-6-S7-S2. Epub 2012 Nov 13. PubMed PMID: 23173746. PMCID: PMC3504800.

Ananthasubramanian S, Metri R, Khetan A, Gupta A, Handen A, Chandra N, Ganapathiraju M. Mycobacterium tuberculosis and Clostridium difficille interactomes: demonstration of rapid development of computational system for bacterial interactome prediction. Microb Inform Exp. 2012 Mar 21;2:4. doi: 10.1186/2042-5783-2-4. PubMed PMID: 22587966. PMCID: PMC3353838.

Ganapathiraju MK, Mitchell AD, Thahir M, Motwani K, Ananthasubramanian S. Suite of tools for statistical n-gram language modeling for pattern mining in whole genome sequences. J Bioinform Comput Biol. 2012 Dec;10(6):1250016. doi: 10.1142/S0219720012500163. Epub 2012 Jul 22. PubMed PMID: 22817111.

Orii N, Ganapathiraju MK. Wiki-Pi: A Web-Server of Annotated Human Protein-Protein Interactions to Aid in Discovery of Protein Function. PLoS ONE. 2012 Nov 28;7(11): e49029. doi: 10.1371/journal.pone.0049029. Epub 2012 Nov 28. PubMed PMID: 23209562. PMCID: PMC3509123.

Orii N, Ganapathiraju MK. Wiki-Pi: a web server of annotated human protein-protein interactions to aid in discovery of protein function. PLoS ONE. 7(11): e49029. doi:10.1371/journal.pone.0049029. Epub 2012 Nov 28. PubMed PMID: 23209562. PMCID: PMC3509123.

Thahir M, Sharma T, Ganapathiraju MK. Active feature acquisition for protein-protein interaction prediction. BMC Bioinformatics. 2012; 6:S2.

Osmanbeyoglu H, Ganapathiraju M. Rapid Deployment of Viral-Human Interactome Prediction for New Viruses. AMIA Translational Bioinformatics Summit, San Francisco, USA, March 7-9, 2011.

Ganapathiraju M, Thahir M, Mitchell AD. Applying N-Gram Language Modeling for Pattern Mining in Whole Genome Sequences. LBM2011: Languages in Biology and Medicine, Singapore, 2011.

Mohamed TP, Carbonell JG, Ganapathiraju MK. Active learning for human protein-protein interaction prediction. BMC Bioinformatics. 2010 Jan 18;11 Suppl 1:S57. doi: 10.1186/1471-2105-1-S1-S57. PubMed PMID: 20122232. PMCID: PMC3009530.

Osmanbeyoglu HU, Wehner JA, Carbonell JG, Ganapathiraju MK. Active machine learning for transmembrane helix prediction. BMC Bioinformatics. 2010 Jan 18;11 Suppl 1:S58. doi: 10.1186/1471-2105-11-S1-S58. PubMed PMID: 20122233. PMCID: PMC3009531.

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