Madhavi Ganapathiraju, PhD

Ganapathiraju MK, Orii N. Research prioritization through prediction of future impact on biomedical science: a position paper on inference-analytics. Gigascience. 2013 Aug 30;2(1):11. doi: 10.1186/2047-217X-2-11. PMID: 24001106

Giorgio E, Rolyan H, Kropp L, Chakka AB, Yatsenko S, Gregorio ED, Lacerenza D, Vaula G, Talarico F, Mandich P, Toro C, Pierre EE, Labauge P, Capellari S, Cortelli P, Vairo FP, Miguel D, Stubbolo D, Marques LC, Gahl W, Boespflug-Tanguy O, Melberg A, Hassin-Baer S, Cohen OS, Pjontek R, Grau A, Klopstock T, Fogel B, Meijer I, Rouleau G, Bouchard JP, Ganapathiraju M, Vanderver A, Dahl N, Hobson G, Brusco A, Brussino A, Padiath QS. Analysis of LMNB1 Duplications in Autosomal Dominant Leukodystrophy Provides Insights into Duplication Mechanisms and Allele-Specific Expression. Human mutation. 2013 May 3. PMID:23649844.

Ananthasubramanian S, Carbonell JG, Ganapathiraju MK. Oracle Characterization for Active Learning for Protein-Protein Interaction Prediction. WCSB 2013; Finland. 2013.

Mycobacterium tuberculosis and Clostridium difficille interactomes: demonstration of rapid development of computational system for bacterial interactome prediction,  Seshan Ananthasubramanian, Rahul Metri, Ankur Khetan, Aman Gupta, Adam Handen, Nagasuma Chandra and Madhavi K Ganapathiraju,  Microbial Informatics and Experimentation, 2012 (in print).

Orii N, Ganapathiraju MK (2012) Wiki-Pi: a web resource to aid in the discovery of gene function via protein-protein interactions. PLoS ONE. 7(11): e49029. doi:10.1371/journal.pone.0049029

Osmanbeyoglu HU, Ganapathiraju MK. N-gram analysis of 970 microbial organisms reveals presence of biological language models. BMC Bioinformatics. 2011; 12 (1):12. PMCID: PMC3027111. PMID: 21219653.

Ganapathiraju MK, Mohamed T, Mitchell AD, Motwani K, Ananthasubramanian S. Suite of tools for statistical n-gram language modeling for pattern mining in whole genome sequences. Journal of Bioinformatics and Computational Biology. 2012; 10 (5). PMID: 22817111.

Thahir M, Sharma T, Ganapathiraju MK. Active feature acquisition for protein-protein interaction prediction. BMC Bioinformatics. 2012; 6:S2. (in press).