Hochheiser H, Ning Y, Hernandez A, Horn, JR, Jacobson R, Boyce RD. Using Nonexperts for Annotating Pharmacokinetic Drug-Drug Interaction Mentions in Product Labeling: A Feasibility Study. JMIR Res Protoc. 2016 Apr 11;5(2):e40. doi: 10.2196/resprot.5028. PMID: 27066806 PMCID: PMC4844909.

Tseytlin E, Mitchell K, Legowski E, Corrigan J, Chavan G, Jacobson RS. NOBLE – Flexible concept recognition for large-scale biomedical natural language processing. BMC Bioinformatics 2016 17:32. PMID: 26763894 [PubMed - in process]  PMCID:  PMC4712516

Jacobson RS, Becich MJ, Bollag RJ, Chavan G, Dhir R, Corrigan J, Feldman M, Ganguly A, Gaudioso C, Legowski E, Maihle N, Mitchell K, Murphy M, Sakthivel M, Tseytlin E, Weaver J. A Federated Network for Translational Cancer Research Using Clinical Data and Biospecimens. Cancer Res. 2015;75(24):5194-201.doi: 10.1158/0008-5472.CAN-15-1973. Review. PMID: 26670560 PMCID: PMC4683415.

Geskin A, Legowski E, Chakka A, Chandran UR, Barmada MM, LaFramboise WA, Berg J, Jacobson RS. Needs Assessment for Research Use of High-Throughput Sequencing at a Large Academic Medical Center. PLoS One. 2015 June 26;10(6):e0131166. http://doi.org/10.1371/journal.pone.0131166. eCollection 2015. PMID: 26115441. PMCID: PMC4483235.

Feyzi-behnagh R, Azevedo R, Legowski E, Reitmeyer K, Tseytlin E, Crowley RS. Metacognitive scaffolds improve self-judgments of accuracy in a medical intelligent tutoring system. Instr Sci. 2014 Mar;42(2):159-81. DOI 10.1007/s11251-013-9275-4. PMCID: PMC3923630 [Available on 2015/3/1] PMID: 24532850

Liu K, Mitchell KJ, Chapman WW, Savova GK, Sioutos N, Ruben DL, Crowley RS. Formative Evaluation of Ontology Learning Methods by Using Existing Ontologies as Reference Standards. Methods of Information in Medicine, 2013 May 13;52(4). PMID: 23666409 [PubMed - in process]

Kuqi K, Eveleigh T, Holzer T, Sarkani S, Crowley RS. Redesigning Electronic Medical Record User Interfaces: A Matrix-Based Framework for Improving Usability J Healthc Eng. 2013;4(3):427-52. doi: 10.1260/2040-2295.4.3.427 PMID: 23965597 [PubMed in process]

Zheng J, Chapman WW, Miller TA, Chen L, Crowley RS, Savova GK. A system for coreference resolution for the clinical narrative. J Am Med Inform Assoc. 2012 Jul 1;19(4):660-7. Epub 2012 Jan 31. PMCID: PMC3384116 [Available on 2013/7/1]

Crowley RS, Legowski E, Medvedeva O, Reitmeyer K, Tseytlin E, Castine M, Jukic D, Mello-Thoms C. Automated detection of heuristics and biases among pathologists in a computer-based system. Adv in Health Sci Educ, Theory and Practice, Epub ahead of print, May 29, 2012. PMID:22618855

Zheng J, Chapman WW, Crowley RS, Savova GK. Coreference resolution: A review of general methodologies and applications in the clinical domain.  Journal of Biomedical Informatics. 2011 Dec;44(6):1113-22. Epub 2011 Aug 12. PMCID:  PMC3226856  [Available on 2012/12/1] DOI: http://dx.doi.org/10.1016/j.jbi.2011.08.006