Xinghua Lu, MD, PhD, MS

Zheng*, B. and Lu, X (2009) Application of semantic modeling in bioinformatics domain.  In: Data Management in Semantic Web, Ed. Jin, H. and Lv, Z,.  Nova Science Publishers, Inc.

Muller*, B., Richards, AJ., Jin, B., Lu, X. (2009) GOGrapher; A Python library for GO graph representation and analysis.  BMC Research Notes 2:122 PMID:19583843

Jin*, B and Lu, X (2009) Enhancing GO-graph-based multi-label classification using semantic-rich GO terms.   Proceedings of the Annual Meeting of the ISMB BioLINK Workshop 2009

Jin, B*., Muller*, B., Zhai, CX, and Lu, X (2008) Multi-label literature classification based on the Gene Ontology graph.  BMC Bioinformatics 9:525. PMID: 19063730

Chen, Y., Zheng*, B., Robbins, DH.,  Lewin, DN., Mikhitarian, K, Graham, A., Rumpp, L, Glenn, T, Gillanders, WE, Cole, DJ,  Lu, X, Hoffman, BJ. and Michael Mitas (2007) Accurate discrimination of pancreatic ductal adenocarcinoma and chronic focal pancreatitis using multi-marker expression data and samples obtained by minimally invasive fine needle aspiration. International Journal of Cancer, 120(7):1511. PMID: 17192896

Zheng*, B., and Lu, X. (2007)  Novel metrics for evaluating the functional coherence of protein groups via protein-semantic-network. Genome Biology 8:R153     [doi:10.1186/gb-2007-8-7-r153] PMID: 17672896

Lu, X., Zheng*, B., Velivelli, A. and  Zhai, C (2006) Enhancing text categorization with semantic-enriched representation and training data augmentation.  J Am Med Inform Assoc, 13(5):526-35. PMID: 16799127

Chen*, Y.A., Chou, C.C., Lu, X., Slate, E.H., Peck, K., Xu, W., Voit, E.O., and Almeida, J.S. A  (2006) Multivariate prediction model for microarray cross-hybridization.  BMC Bioinformatics 7:101 (Designated as highly accessed paperPMID: 16509965

Cowart, L.A., Okamoto, Y., Lu, X. and Hannun, Y.A. (2006) Distinct roles for de novo versus hydrolytic pathways of sphingolipid biosynthesis in Saccharomyces cerevisiae.  Biochemical J.  393(3):733. PMID: 16201964

Zheng*, B., McLean*, DC., and Lu, X. (2006) Identifying biological concepts from a protein-related corpus with a probabilistic topic model. BMC Bioinformatics 7:58. PMID: 16466569

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