DBMI Publications

Zhou Yuan, Sean Finan, Jeremy Warner, Guergana Savova, Harry Hochheiser. Interactive Exploration of Longitudinal Cancer Patient Histories Extracted from Clinical Text. JCO Cancer Clinical Informatics  May 2020 DOI: 10.1200/CCI.19.00115 PMID: 32383981 PMCID In progress
King AJ, Cooper GF, Clermont G, Hochheiser H, Hauskrecht M, Sittig DF, Visweswaran S Leveraging Eye Tracking to Prioritize Relevant Medical Record Data: Comparative Machine Learning Study J Med Internet Res 2020;22(4):e15876 
Villa Zapata, L., Hansten, P.D., Horn, J.R. et al. Evidence of Clinically Meaningful Drug–Drug Interaction With Concomitant Use of Colchicine and Clarithromycin. Drug Saf (2020). https://doi.org/10.1007/s40264-020-00930-7
Young JD, Andrews B, Cooper GF, Lu X. Learning Latent Causal Structures with a Redundant Input Neural Network. arXiv:2003.13135v1 29 Mar 2020.  
Aronis JM, Ferraro JP, Gesteland PH, Tsui F, Ye Y, Wagner MM, Cooper GF. A Bayesian approach for detecting a disease that is not being modeled. PLOSOne. 2020 Feb 28;15(2):e0229658. doi: 10.1371
Danielle M Minteer, Patsy Simon, Donald P. Taylor, Wenyan Jia, Yuecheng Li, Mingui Sun, J. Peter Rubin. PUMP: Pressure Ulcer Monitoring Platform – A prospective, human subject clinical study to validate patient repositioning monitoring device to prevent pressure ulcers. Adv Wound Care (New Rochelle). 2020 Jan 1;9(1):28-33. doi: 10.1089/wound.2018.0934. Epub 2019 Dec 6.
Lifan Liang, Kunju Zhu, Songjian Lu. BEM: Mining Coregulation Patterns in Transcriptomics via Boolean Matrix Factorization. Bioinformatics 2020 Jan 8. pii: btz977. doi: 10.1093/bioinformatics/btz977
Andrew D Hughes, Daqiang Zhao, Hehua Dai, Khodor I. Abou-Daya, Roger Tieu, Rayan Rammal, Amanda L. Williams, Douglas P. Landsittel, Warren D Sclomchik, Adrian E. Morelli, Martin H. Oberbarnscheidt, Fadi G. Lakkis. Cross-dressed dendritic cells sustain effector T cells responses in islet and kidney allographs. J Clin Invest. 2020 Jan 2;130(1):287-294. doi: 10.1172/JCI125773
Erik Scott Wright. RNAconTest: Comparing tools for non-coding RNA multiple sequence alignment based on structural consistency.  RNA. 2020 Jan 31. pii: rna.073015.119. doi: 10.1261/rna.073015.119
Kristin J. Cummings, Michael J. Becich, David J. Blackley, Dennis Deapen, Robert Harrison, Raffit Hassan, S. Jane Henley, Mary Hsdorffer, D. Kevin Horton, Jacek M. Mazurek, Harvey I. Pass, Emanuela Taioli, Xiao-Cheng Wu, Marjorie G. Zauderer, David N. Weissman. Workshop summary: Potential usefulness and feasibility of a US National Mesothelioma Registry. American Journal of Industrial Medicine. 2020 Feb;63(2):105-114. doi: 10.1002/ajim.23062.