DBMI Publications

Yifeng Tao, Shuangxia Ren, Michael Q. Ding, Russell Schwartz, Xinghua Lu. Predicting Drug Sensitivity of Cancer Cells Lines via Collaborative Filtering with Contextual Attention.  Proceedings of Machine Learning Research. 2020. 1-A7
Sofia Triantafillou, Gregory F. Cooper. Learning Adjustment Sets from Observational and Limited Experimental Data. 2020 . arXiv preprint arXiv:2005.08749, 2020
Jabbari F, Cooper GF. An instance-specific algorithm for learning the structure of causal Bayesian networks containing latent variables. In: Proceedings of the SIAM International Conference on Data Minin (2020) 433-441.
Jain, Seema ; Rothenberger, Scott D ; Bennett, Wendy L ; Clark, Jeanne M ; Conroy, Molly B ; Herring, Sharon J ; Kraschnewski, Jennifer L ; Lent, Michelle R ; Bramante, Carolyn T ; Cappella, Nickie ; McTigue, Kathleen M“Provider Advice and Patient Perceptions on Weight Across Five Health Systems.” American journal of preventive medicine 59.3 (2020): e105–e114.
Lifan Liang, Kunju Zhu, Songjian Lu. BEM: Mining Coregulation Patterns in Transcriptomics via Boolean Matrix Factorization. Bioinformatics 2020 Jan 8. pii: btz977. doi: 10.1093/bioinformatics/btz977
Andrew D Hughes, Daqiang Zhao, Hehua Dai, Khodor I. Abou-Daya, Roger Tieu, Rayan Rammal, Amanda L. Williams, Douglas P. Landsittel, Warren D Sclomchik, Adrian E. Morelli, Martin H. Oberbarnscheidt, Fadi G. Lakkis. Cross-dressed dendritic cells sustain effector T cells responses in islet and kidney allographs. J Clin Invest. 2020 Jan 2;130(1):287-294. doi: 10.1172/JCI125773
Erik Scott Wright. RNAconTest: Comparing tools for non-coding RNA multiple sequence alignment based on structural consistency.  RNA. 2020 Jan 31. pii: rna.073015.119. doi: 10.1261/rna.073015.119
Kristin J. Cummings, Michael J. Becich, David J. Blackley, Dennis Deapen, Robert Harrison, Raffit Hassan, S. Jane Henley, Mary Hsdorffer, D. Kevin Horton, Jacek M. Mazurek, Harvey I. Pass, Emanuela Taioli, Xiao-Cheng Wu, Marjorie G. Zauderer, David N. Weissman. Workshop summary: Potential usefulness and feasibility of a US National Mesothelioma Registry. American Journal of Industrial Medicine. 2020 Feb;63(2):105-114. doi: 10.1002/ajim.23062.
Grizzle AJ, Hines LE, Malone DC, Kravchenko O, Hochheiser H, Boyce RD. Testing the face validity and inter-rater agreement of a simple approach to drug-drug interaction evidence assessment. J Biomed Inform. 2020 Jan;101:103355. doi: 10.1016/j.jbi.2019.103355. Epub 2019 Dec 12. PMID: 31838211; DOI: 10.1016/j.jbi.2019.103355.
Luca Calzoni, Gilles Clermont, Gregory F. Cooper, Shyam Visweswaran, Harry Hochheiser.  Exploring novel graphical presentations of clinical data in a Learning Electronic Medical Record. Appl Clin Inform 2020; 11(04): 680-691. DOI: 10.1055/s-0040-1709707. PMID: 33058103