Post Docs and Researchers

Fattaneh Jabbari

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Jabbari, Fattaneh
Postdoctoral Associate Researcher
5108 SENSQ
Publications: 

Jabbari F, Viswewaran S, Cooper GF. Instance-Specific Bayesian Network Structure Learning. Proceedings of the International Conference on Probabilistic Graphical Models (2018) Sep;72:169-180.  PMID: 30775723. PMCID: PMC6376975.

Nick Cooley, PhD

Directory Listing Information
Cooley, Nick
Wright Lab
437 Bridgeside Point II
450 Technology Dr
Pittsburgh, PA 15219
412-383-0028 (lab)

Postdoctoral Associate, Department of Biomedical Informatics

BS, Microbiology/Molecular Genetics, Ohio State University
PhD, Chemistry, University of Missouri

Ye Ye, BS, MS

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Postdoctoral Associate, Department of Biomedical Informatics

Publications: 
Aronis JM, Ferraro JP, Gesteland PH, Tsui F, Ye Y, Wagner MM, Cooper GF. A Bayesian approach for detecting a disease that is not being modeled. PLOSOne. 2020 Feb 28;15(2):e0229658. doi: 10.1371

Rexit R, Tsui FC, Espino JU, Chrysanthis PK, Wesaratchakit S, Ye Y. An analytics appliance for identifying (near) optimal over-the-counter medicine products as health indicators for influenza surveillance. J Manager Infor Systems. 2015;48:151-63.

Lu S, Ye Y, Tsui F-C, Su H, Rexit R, Wesaratchakit S, Hwa R. "Domain ontology-based feature reduction for high dimensional drug data and its application to 30-day heart failure readmission prediction," Collaborative Computing: Networking, Applications and Worksharing (Collaboratecom), 2013 9th International Conference Conference on, Austin, TX, 2013, pp. 478-484.

 

Education

BS (2006 Medicine) Peking University, China
 
MS (2007 Statistics) Peking University, China
 
MS (2011 Public Health Informatics) Emory University
 
PhD (2018, Intelligent Systems) University of Pittsburgh

 

Lujia Chen, PhD

Directory Listing Information
Chen, Lujia
Room 411B
5607 Baum Boulevard
Pittsburgh, PA 15206

Postdoctoral Associate, Department of Biomedical Informatics

Publications: 

Lu S, Fan X, Chen L, Lu X. A novel method of using Deep Belief Networks and genetic perturbation data to search for yeast signaling pathways. Plos One. September 2018; 13(9). https://doi.org/10.1371/journal.pone.0203871. 

Chen L, Lu X. Making deep learning models transparent. J of Med Artif Intell 2018; 1:5.

Lu S, Cai C, Yan G, Zhou Z, Wan Y, Chen V, Chen L, Cooper GF, Obeid LM, Hannun YA, Lee AV, Lu X. Signal-Oriented Pathway Analyses Reveal a Signaling Complex as a Synthetic Lethal Target for p53 Mutations. Cancer Res. 206 Dec 1:76(23):6785-6794. doi: 10.1158/0008-5472.CAN-16-1740. Epub 2016 Oct 10. PMID: 27758891. PMCID: PMC5165695.

Montefusco DJ, Chen L, Matmati N, Lu S, Newcomb B, Cooper GF, Hannun YA, Lu X. Distinct signaling roles of ceramide species in yeast revealed through systematic perturbation and systems biology analyses. Sci Signal. 2013 Oct 29;6(299): rs14. doi: 10.1126/scisignal.2004515. PMID: 24170935. PMC3974757.


Research Interests

Microarray data analysis

Machine Learning


Education

BS  (2008, Biological Technology) University of Science & Technology, Beijing, China

MS (2012, Biomedical Informatics) University of Pittsburgh, Pittsburgh, PA

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