DBMI Publications

Mungall CJ, McMurry JA, Köhler S, Balhoff JP, Borromeo C, Brush M, Carbon S, Conlin T, Dunn N, Engelstad M, Foster E, Gourdine JP, Jacobson JOB, Keith D, Laraway B, Lewis SE, NguyenXuan J, Shefchek K, Vasilevsky N, Yuan Z, Washington N, Hochheiser H, Groza T, Smedley D, Robinson PN, Haendel MA. The Monarch Initiative: An Integrative Data and Analytic Platform Connecting Phenotypes to Genotypes across Species. Nucleic Acids Res. 2017 Jan 4;45(D1):D712-D722. doi: 10.1093/nar/gkw1128. Epub 2016 Nov 29. PubMed PMID: 27899636. PubMed Central PMCID: PMC5210586.
Jabbari F, Ramsey J, Spirtes P, Cooper GF. Discovery of causal models that contain latent variables through Bayesian scoring of independence constraints. In: Proceeding of the European Conference on Machine Learning (2017).
Kummerfeld E, Cooper GF. A new method for estimating causal model learning accuracy. In: Workshop on Data Mining for Medical Informatics (DMMI) – Causal Inference for Health Data Analytics (2017).
Naeini Pakdaman M, Jabbari F, Cooper GF. An assessment of the calibration of causal relationships learned using RFCI and bootstrapping. In: AMIA Workshop on Data Mining for Medical Informatics (DMMI) – Causal Inference for Health Data Analytics (2017).
Heyer CM, Sundsbak JL, Abebe KZ, Chapman AB, Torres VE, Grantham JJ, Bae KT, Schrier RW, Perrone RD, Braun WE, Steinman TI, Mrug M, Yu A, Brosnahan G, Hopp K, Bennett WM, Flessner MF, Moore CG, Landsittel D and Harris PC for the HALT PKD and CRISP Investigators. Predicted Mutation Strength of Nontruncating PKD1 Mutations Aids Genotype-Phenotype Correlations in Autosomal Dominant Polycystic Kidney Disease. Journal of the American Society of Nephrology. 2016; 27(9):2872-2884. PMID: 26823553 PMCID: PMC5004648 [Available on 2017-09-01] DOI: 10.1681/ASN.2015050583
Dunn MA, Josbeno DA, Schmotzer AR, Tevar AD, DiMartini AF, Landsittel DP, Delitto A. The gap between clinically assessed physical performance and objective physical activity in liver transplant candidates. Liver Transplantation. 2016;22(10):1324-1332. DOI: 10.1002/lt.24506
Hochheiser H, Castine M, Harris D, Savova G, Jacobson RS.  An information model for computable cancer phenotypes. BMC Medical Informatics and Decision Making. Sept. 2016: 1-15. doi=10.1186/s12911-016-0358-4.
Fisher A. Ding M, Hochheiser H, Douglas G. (2016) Measuring time utilization of pharmacists in the Birmingham Free Clinic dispensary. BMC Health Services Research 16(1-7) DOI: 10.1186/s12913-016-17.
Hogan WR, Wagner MM, Brochhausen M, Levander J, Brown ST, Millett N, DePasse J, Hanna J. The Apollo Structured Vocabulary: an OWL2 ontology of phenomena in infectious disease epidemiology and population biology for use in epidemic simluation. J Biomed Semantics. 2016 Aug 18;7:50. doi: 10.1186/s13326-016-0092-y. PMID: 27538448. PMCID: PMC4989460.
McMurry JA, Köhler S, Washington NL, Balhoff JP, Borromeo C, Brush M, Carbon S, Conlin T, Dunn N, Engelstad M, Foster E, Gourdine JP, Jacobsen JO, Keith D, Laraway B, Xuan JN, Shefchek K, Vasilevsky NA, Yuan Z, Lewis SE, Hochheiser H, Groza T, Smedley D, Robinson PN, Mungall CJ, Haendel MA. Navigating the Phenotype Frontier: The Monarch Initiative. Genetics. 2016 Aug;203(4):1491-5. PMID: 27516611 PMCID: PMC4981258.
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