DBMI Publications

Binder P, Batmanghelich N, Estepar R, Golland P. Unsupervised Discovery of Emphysema Subtypes in a Large Clinical Cohort. Machine Learning in Medical Imaging: 7th International Workshop, MLMI 2016, Held in Conjunction with MICCAI 2016, Athens, Greece, October 17, 2016, Proceedings. 2016 Oct;10019:180-187. doi: 10.1007/978-3-319-47157-0_22. Epub 2016 Oct 1. PubMed PMID: 28232959. PubMed Central PMCID: PMC5317320.
Frahm KA, Peffer ME, Zhang JY, Luthra S, Chakka AB, Couger MB, Chandran UR, Monaghan AP, DeFranco DB. Research Resource: The Dexamethasone Transcriptome in Hypothalamic Embryonic Neural Stem Cells. Molecular Endocrinology (Baltimore, Md.). 2016 Jan;30(1):144-54. PMID: 26606517
Tseytlin E, Mitchell K, Legowski E, Corrigan J, Chavan G, Jacobson RS. NOBLE – Flexible concept recognition for large-scale biomedical natural language processing. BMC Bioinformatics 2016 17:32. PMID: 26763894 [PubMed - in process]  PMCID:  PMC4712516
Day, RS. Want a letter? You write it for me. Science. 2016 Jan 8;351(6269):198. PMID: 26744407
Chen, L., Cai, C., Chen, V., and Lu, X (2015) Learning a hierarchical representation of the yeast transcriptomic machinery using an autoencoder model.  BMC Bioinformatics Suppl 1:9. doi: 10.1186/s12859-015-0852-1. PMID: 26818848  PMCID: PMC4895523
Day, RS., Want a letter? You write it for me. Science. 2016 Jan 8;351(6269):198. PMID: 26744407 DOI: 10.1126/science.351.6269.198
Ganapathiraju MK, Thahir M, Handen A, Sarkar SN, Sweet RA, Nimgaonkar VL, Loscher CE, Bauer EM, Chaparala S: Schizophrenia interactome with 504 novel protein–protein interactions. Npj Schizophrenia 2016, 2:16012. Link to Publication
Huser, Vojtech; DeFalco, Frank J.; Schuemie, Martijn; Ryan, Patrick B.; Shang, Ning; Velez, Mark; Park, Rae Woong; Boyce, Richard D.; Duke, Jon; Khare, Ritu; Utidjian, Levon; and Bailey, Charles (2016) "Multisite Evaluation of a Data Quality Tool for Patient-Level Clinical Datasets," eGEMs (Generating Evidence & Methods to improve patient outcomes): Vol. 4: Iss. 1, Article 24. DOI: http://dx.doi.org/10.13063/2327-9214.1239
Mathew L, Lott J, Isse K, Lesniak A, Landsittel D, Demetris A, Sun Y, Mercer D, Webber S, Zeevi A, Fisher R, Feingold B, and Turnquist H. Increased Expression of the IL-33 Receptor, ST2, Correlates with Pediatric Heart and Small Bowel Transplant Rejection. American Journal of Transplantation. 2016. 16(3):938-950.
Arturo López Pineda, Ye Ye, Shyam Visweswaran, Gregory F. Cooper, Michael M. Wagner, Fuchiang Rich Tsui. Comparison of Machine Learning Classifiers for Influenza Detection from Emergency Department Free-text Reports. Journal of Biomedical Informatics. Available online 16 September 2015, ISSN 1532-0464. PMID: 26385375 http://dx.doi.org/10.1016/j.jbi.2015.08.019.(http://www.sciencedirect.com/science/article/pii/S1532046415001872)
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