DBMI Publications

Cooper GF, Villamarin R, Rich Tsui FC, Millett N, Espino JU, Wagner MM. A method for detecting and characterizing outbreaks of infectious disease from clinical reports. J Biomed Inform. 2015 Feb; 53:15-26.  doi: 10.1016/j.jbi.2014.08.011. Epub 2014 Aug 30.  PMID: 25181466. PMCID: PMC4441330.
Day RS. What Tumor Dynamics Modeling Can Teach us About Exploiting the Stem-Cell View for Better Cancer Treatment. Cancer Informatics. 2015 Feb 24;14(Suppl 2):25-36. doi: 10.4137/CIN.S17294. eCollection 2015. PMID: 25780337. PMCID: PMC434585.
Naeini MP, Cooper GF, Hauskrecht M. Obtaining well calibrated probabilities using Bayesian binning. In: Proceedings of the Conference of the Association for the Advancement of Artificial Intelligence (2015) Jan;2015:2901-2907. PMID: 25927013 PMC4410090.
Kevin McDade, Uma Chandran, Roger Day.  Improving Cancer Gene Expression Data Quality through a TCGA Data-Driven Evaluation of Identifier Filtering.  Cancer Informatics 2015 Dec 16;14:149-161.  DOI: 10.4137/CIN.S33076
Jiang X, Jao J, Neapolitan RE. Learning predictive interactions using information gain and Bayesian network scoring. PLoS ONE. 2015; 10(12): e0143247. doi:10.1371/journal.pone.0143247. PMCID: PMC4666609.
Handen A, Ganapthiraju MK. LENS: web-based lens for enrichment and network studies of human proteins. BMC Medical Genomics. 2015;8(Suppl 4):S2. doi:10.1186/1755-8794-8-S4-S2.  
Roth A, Subramanian S, Ganapathiraju MK. Towards extracting supporting information about predicted protein-protein interactions. IEEE/ACM Trans Comput Biol Bioinform. 2015 Dec 7. [Epub ahead of print] PubMed PMID: 26672046.  
McDade KK, Chandran U, Day RS. Improving Cancer Gene Expression Data Quality through a TCGA Data-Driven Evaluation of Identifier Filtering. Cancer Inform. 2015 Dec 16;14:149-61. doi: 10.4137/CIN.S33076. eCollection 2015. PMID: 26715829. PMCID: PMC4686346.
Kuziemsky CE, Nøhr C, Borycki EM, Kushniruk AW, Senathirajah Y. Understanding the Context of Patient Safety Through The Lenses of Three IMIA Working Groups. Stud Health Technol Inform. 2015;218:40615. PMID: 26262545.
Senathirajah Y. Safer Design - Composable EHRs and Mechanisms for Safety. Stu Health Technol Inform. 2015;218:40602. PMID: 2626532.
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