DBMI Publications

Jiang X, Neapolitan RE. LEAP: biomarker inference through learning and evaluating association patterns. Genetic Epidemiology. 2015; 39(3):173–184. PMID: 25677188. PMCID: PMC4366363.
Day RS. What Tumor Dynamics Modeling Can Teach us About Exploiting the Stem-Cell View for Better Cancer Treatment. Cancer Informatics. 2015 Feb 24;14(Suppl 2):25-36. doi: 10.4137/CIN.S17294. eCollection 2015. PMID: 25780337. PMCID: PMC434585.
Neapolitan RE, Jiang X. Study of integrated heterogeneous data reveals prognostic power of gene expression for breast cancer survival. PLoS ONE. 2015; 10 (2): DOI: 10.1371/journal.pone.0117658. PMID: 25723490. PMCID: PMC4344205.
Cooper GF, Villamarin R, Rich Tsui FC, Millett N, Espino JU, Wagner MM. A method for detecting and characterizing outbreaks of infectious disease from clinical reports. J Biomed Inform. 2015 Feb; 53:15-26.  doi: 10.1016/j.jbi.2014.08.011. Epub 2014 Aug 30.  PMID: 25181466. PMCID: PMC4441330.
Naeini MP, Cooper GF, Hauskrecht M. Obtaining well calibrated probabilities using Bayesian binning. In: Proceedings of the Conference of the Association for the Advancement of Artificial Intelligence (2015) Jan;2015:2901-2907. PMID: 25927013 PMC4410090.
J. L. Wisnowski, R. C. Ceschin, S. Y. Choi, V. J. Schmithorst, M. J. Painter, M. D. Nelson, S. Blüml, and A. Panigrahy, “Reduced thalamic volume in preterm infants is associated with abnormal white matter metabolism independent of injury.,” Neuroradiology, Feb. 2015. PMID: 25666231 PMCID: PMC4405472 DOI: 10.1007/s00234-015-1495-7
R. Ceschin, A. Panigrahy, and V. Gopalakrishnan, “Sfdm: Open-source software for temporal analysis and visualization of brain tumor diffusion mr using serial functional diffusion mapping,” Cancer Inform., vol. 14, pp. 1–9, 2015. PMID: 25673970 PMCID: PMC4315050 DOI: 10.4137/CIN.S17293
Kevin McDade, Uma Chandran, Roger Day.  Improving Cancer Gene Expression Data Quality through a TCGA Data-Driven Evaluation of Identifier Filtering.  Cancer Informatics 2015 Dec 16;14:149-161.  DOI: 10.4137/CIN.S33076
Jiang X, Jao J, Neapolitan RE. Learning predictive interactions using information gain and Bayesian network scoring. PLoS ONE. 2015; 10(12): e0143247. doi:10.1371/journal.pone.0143247. PMCID: PMC4666609.
McDade KK, Chandran U, Day RS. Improving Cancer Gene Expression Data Quality through a TCGA Data-Driven Evaluation of Identifier Filtering. Cancer Inform. 2015 Dec 16;14:149-61. doi: 10.4137/CIN.S33076. eCollection 2015. PMID: 26715829. PMCID: PMC4686346.
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