DBMI Publications

Manohar R, Li Y, Fohrer H, Guzik L, Stolz DB, Chandran UR, LaFramboise WA, Lagasse E. Identification of a candidate stem cell in human gallbladder. Stem Cell Res. 2015 May;14(3):258-69. http://doi.org/10.1016/j.scr.2014.12.003. Epub 2015 Feb 7. PMID: 25765520. PMCID: PMC4439375.
Lujia Chen, Chunhui Cai, Vicky Chen and Xinghua Lu.  Trans-species learning of cellular signaling systems with bimodal deep belief networks.  Bioinformatics 2015; doi: 10.1093/bioinformatics/btv315 
Zhu Y, Xu Y, Helseth DL Jr, Gulukota K, Yang S, Pesce LL, Mitra R, Müller P, Sengupta S, Guo W, Silverstein JC, Foster I, Parsad N, White KP, Ji Y.  Zodiac: A Comprehensive Depiction of Genetic Interactions in Cancer by Integrating TCGA Data. J Natl Cancer Inst. 2015 May 8;107(8). pii: djv129. PMID: 25956356 PMCID: PMC4554190 DOI: 10.1093/jnci/djv129
Draper AJ, Ye Y, Ruiz VM, Patterson C, Urbach A, Palmer F, Wang S, Somboonna M, Tsui F.-C., Using laboratory data for prediction of 30-day hospital readmission of pediatric seizure patients, Conference Proceedings, American Medical Informatics Association, Washington DC, Nov. 2014 (Distinguished award)
Farabaugh SM, Boone DN, and Lee AV. Role of IGF1R in breast cancer subtypes, stemness, and lineage differentiation.  Frontiers in Endocrinology. 2015. PUBMED 25964777
Jiang X, Neapolitan RE. LEAP: biomarker inference through learning and evaluating association patterns. Genetic Epidemiology; 2015; 39(3):173–184. PMID: 25677188  PMCID: PMC4366363
Pfundner , A., Schönberg, T., Horn., J., Boyce, RD., and Samwald, M. Utilizing the Wikidata system to improve the quality of medical content in Wikipedia in diverse languages: a pilot study. Journal of Medical Internet Research. 2015; 17(5). http://www.jmir.org/2015/5/e110/ .PMCID: PMC4468594
Li Y, Klena NT, Gabriel GC, Liu X, Kim AJ, Lemke K, Chen Y, Chatterjee B, Devine W, Damerla RR, Chang C, Yagi H, San Agustin JT, Thahir M, Anderton S, Lawhead C, Vescovi A, Pratt H, Morgan J, Haynes L, Smith CL, Eppig JT, Reinholdt L, Francis R, Leatherbury L, Ganapathiraju MK, Tobita K, Pazour GJ, Lo CW. Global genetic analysis in mice unveils central role for cilia in congenital heart disease. Nature. 2015 Mar 25. doi: 10.1038/nature14269. [Epub ahead of print] PubMed PMID: 25807483.
Rexit R, Tsui FC, Espino JU, Chrysanthis PK, Wesaratchakit S, Ye Y. An analytics appliance for identifying (near) optimal over-the-counter medicine products as health indicators for influenza surveillance. J Manager Infor Systems. 2015;48:151-63.
Pineda, AL, Gopalakrishnan, V. Novel Application of Junction Trees to the Interpretation of Epigenetic Differences among Lung Cancer Subtypes. Proceedings of the AMIA Translational Bioinformatics Summit. March 21-23, 2015. PMID: 26306226   Winner of the Marco Ramoni Distinguished Paper Award.
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