DBMI Publications

Uppal R, Mandava G, Romagnoli KM, King AJ, Draper AJ, Handen AL, Fisher AM, Becich MJ, Dutta-Moscato J. How can we improve Science, Technology, Engineering, and Math education to encourage careers in Biomedical and Pathology Informatics? J Pathol Inform. 2016 Jan 29;7:2. doi: 10.4103/2153-3539.175375. eCollection 2016. PMID: 26955500. PMCID: PMC4763503.
Frahm KA, Peffer ME, Zhang JY, Luthra S, Chakka AB, Couger MB, Chandran UR, Monaghan AP, DeFranco DB. Research Resource: The Dexamethasone Transcriptome in Hypothalamic Embryonic Neural Stem Cells. Mol Endocrinol. 2016 Jan;30(1):144-54. doi: 10.1210/me.2015-1258. PMID: 26606517. PMCID: PMC4695633.
Day RS. Want a letter? You write it for me. Science. 2016 Jan 8;351(6269):198. PMID: 26744407 DOI: 10.1126/science.351.6269.198
Chen, L., Cai, C., Chen, V., and Lu, X (2015) Learning a hierarchical representation of the yeast transcriptomic machinery using an autoencoder model.  BMC Bioinformatics Suppl 1:9. doi: 10.1186/s12859-015-0852-1. PMID: 26818848  PMCID: PMC4895523
Ganapathiraju MK, Thahir M, Handen A, Sarkar SN, Sweet RA, Nimgaonkar VL, Loscher CE, Bauer EM, Chaparala S: Schizophrenia interactome with 504 novel protein–protein interactions. Npj Schizophrenia 2016, 2:16012. Link to Publication
Mathew L, Lott J, Isse K, Lesniak A, Landsittel D, Demetris A, Sun Y, Mercer D, Webber S, Zeevi A, Fisher R, Feingold B, and Turnquist H. Increased Expression of the IL-33 Receptor, ST2, Correlates with Pediatric Heart and Small Bowel Transplant Rejection. American Journal of Transplantation. 2016. 16(3):938-950.
Jacobson RS, Becich MJ, Bollag RJ, Chavan G, Dhir R, Corrigan J, Feldman M, Ganguly A, Gaudioso C, Legowski E, Maihle N, Mitchell K, Murphy M, Sakthivel M, Tseytlin E, Weaver J. A Federated Network for Translational Cancer Research Using Clinical Data and Biospecimens. Cancer Res. 2015;75(24):5194-201.doi: 10.1158/0008-5472.CAN-15-1973. Review. PMID: 26670560 PMCID: PMC4683415.
R. Ceschin, B. F. Kurland, S. R. Abberbock, B. M. Ellingson, H. Okada, R. I. Jakacki, I. F. Pollack, and A. Panigrahy, “Parametric Response Mapping of Apparent Diffusion Coefficient as an Imaging Biomarker to Distinguish Pseudoprogression from True Tumor Progression in Peptide-Based Vaccine Therapy for Pediatric Diffuse Intrinsic Pontine Glioma.,” AJNR. Am. J. Neuroradiol., Sep. 2015. PMID: 26338910 PMCID: PMC4644687 DOI: 10.3174/ajnr.A4428
R. Ceschin, V. K. Lee, V. Schmithorst, and A. Panigrahy, “Regional vulnerability of longitudinal cortical association connectivity: Associated with structural network topology alterations in preterm children with cerebral palsy.,” NeuroImage. Clin., vol. 9, pp. 322–37, Jan. 2015. PMID: 26509119 PMCID PMC4588423 DOI: 10.1016/j.nicl.2015.08.021
Chandran UR, Luthra S, Santana-Santos L, Mao P, Kim SH, Minata M, Li J, Benos PV, DeWang M, Hu B, Cheng SY, Nakano I, Sobol RW. Gene expression profiling distinguishes proneural glioma stem cells from mesenchymal glioma stem cells. Genom Data. 2015 Sep 1;5:333-336.http://doi.org/10.1016/j.gdata.2015.07.007. PMID: 26251826. PMCID: PMC4523279.
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