DBMI Publications

Dunn M, Josbeno D, Sturdevant M, Rachakonda V, Ganesh S, Schmotzer A, Kallenborn E, Behari J, Landsittel D, DiMartini A, Delitto A. Frailty as tested by gait speed is an independent risk factor for cirrhosis complications that require hospitalization. American Journal of Gastroenterology. 2016;111(12):1768-1775.  PMID: 27575708  DOI: 10.1038/ajg.2016.336
Torbati ME, Mitreva M, Gopalakrishnan V. Application of Taxonomic Modeling to Microbiota Data Mining for Detection of Helminth Infection in Global Populations.  2016 Dec;1(3). pii: 19. doi: 10.3390/data1030019. Epub 2016 Dec 13.    PMID: 28239609  PMCID: PMC5325162  DOI: 10.3390/data1030019  
Naeini Pakdaman M, Cooper GF. Binary classifier calibration using an ensemble of near isotonic regression models. In: Proceedings of the IEEE International Conference on Data Mining (2016) Dec;2016:360-369.  doi: 10.1109/ICDM.2016.0047  PMID: 28316511 PMCID: PMC5351887
Wright ES, Vetsigian KH. Quality filtering of Illumina index reads mitigates sample cross-talk. BMC Genomics. 2016 Nov 4;17(1):876. doi: 10.1186/s12864-016-3217-x. PMID: 27814679. PMCID: PMC5097354.
Kim Y, Bae S, Cheng T, Tao C, Ge Y, Chapman A, Torres V, Yu A, Mrug M, Bennett W, Flessner M, Landsittel D, Bae T. Automated segmentation of liver and liver cysts from bounded abdominal MR images in patients with autosomal dominant  polycystic kidney disease. Physics in Medicine and Biology. 2016;61(22):7864-7880. PMID: 27779124 PMCID: PMC5244890 [Available on 2017-11-21] DOI: 10.1088/0031-9155/61/22/7864
Borycki E, Dexheimer JW, Hullin Lucay Cossio C, Gong Y, Jensen S, Kaipio J, Kennebeck S, Kirkendall E, Kushniruk AW, Kuziemsky C, Marcilly R, Röhrig R, Saranto K, Senathirajah Y, Weber J, Takeda H. Methods for Addressing Technology-induced Errors: The Current State. Yearb Med Inform. 2016 Nov 10;(1):30-40. doi: 10.15265/IY-2016-029. Review. PMID: 27830228. PMCID: PMC5171580.
Batmanghelich N, Saeedi A, Estepar RJ, Cho M, Wells S. Inferring Disease Status by non-Parametric Probabalistic Embedding. Medical Computer Vision and Bayesian and Graphical Models for Biomedical Imaging. 2016 Oct 21; 49-57.
Binder P, Batmanghelich N, Estepar R, Golland P. Unsupervised Discovery of Emphysema Subtypes in a Large Clinical Cohort. Machine Learning in Medical Imaging: 7th International Workshop, MLMI 2016, Held in Conjunction with MICCAI 2016, Athens, Greece, October 17, 2016, Proceedings. 2016 Oct;10019:180-187. doi: 10.1007/978-3-319-47157-0_22. Epub 2016 Oct 1. PubMed PMID: 28232959. PubMed Central PMCID: PMC5317320.
Hauskrecht M, Batal I, Hong C, Nguyen Q, Cooper GF, Visweswaran S, Clermont G. Outlier-based detection of unusual patient-management actions: An ICU study. Journal of Biomedical Informatics (2016) Oct 5  pii: S1532-0464(16)30135-6. doi: http://dx.doi.org/10.1016/j.jbi.2016.10.002. PMID: 27720983. PMCID: PMC5207478.
Samwald M, Xu H, Blagec K, Empey PE, Malone DC, Ahmed SM, Boyce RD, et al. (2016) Incidence of Exposure of Patients in the United States to Multiple Drugs for Which Pharmacogenomic Guidelines Are Available. PLoS ONE 11(10): e0164972. PMID: 27764192  DOI: 10.1371/journal.pone.0164972
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