Shyam Visweswaran, MD, PhD

Ogoe, HA, Visweswaran, S, Lu, X, Gopalakrishnan, V.  (2015) Knowledge transfer via classification rules using functional mapping for integrative modeling of gene expression data.  BMC Bioinformatics 16:226 (designated as a Highly Accessed paper) PMID: 26202217 PMCID: PMC4512094

Visweswaran S, Ferreira A, Cooper GF. Personalized modeling for prediction with decision-path models. PLoS One. 2015 Jun 22;10(6):e0131022 PMID: 26098570 PMCID: PMC4476684

Eric Strobl, Shyam Visweswaran. Markov boundary discovery with ridge regularized linear models. Journal of Causal Inference. ISSN (Online) 2193-3685, ISSN (Print) 2193-3677, DOI: 10.1515/jci-2015-0011, November 2015

Aflakparast, M, Masoudi-Nejad, A, Bozorgmehr, JH, Visweswaran, S. Informative Bayesian Model Selection: A method for identifying interactions in genome-wide data. Molecular BioSystems. 2014 Aug 26; 10(10):2654-62. PMID: 25070634

Zaidi, A.H, Gopalakrishnan, V., Kasi, P. M., Zeng, X., Malhotra, U., Balasubramanian, J., Visweswaran, S., Sun, M., Flint, M. S., Davison, J. M., Hood, B. L., Conrads, T. P., Bergman, J.J., Bigbee, W. L., Jobe, B. A. Evaluation of a 4-protein serum biomarker panel – biglycan, annexin-A6, myeloperoxidase and protein S100-A9 (B-AMP©) – for the detection of esophageal adenocarcinoma. Cancer. 2014 Aug 5. PMID: 25100294. PMCID: PMC4441619 (Impact Factor = 5.201).

Jiang X, Visweswaran S, Neapolitan RE. Scoring and Searching Bayesian Network Models of Gene-Phenotype Association. In: Sinoquet C, Mourad R, editors. Probabilistic Graphical Models for Genetics, Genomics and Postgenomics. Oxford University Press, 2014

Chapter 11

Jiang X, Visweswaran S, Neapolitan RE. Mining Epistatic Interactions from High-Dimensional Data Sets Using Bayesian Networks. In: Holmes D, Jain L, editors. Foundations and Intelligent Paradigms-3. Berlin, Heidelberg: Springer-Verlag, 2011.

Stokes ME, Barmada MM, Kamboh MI, Visweswaran S. The application of network label propagation to rank biomarkers in genome-wide Alzheimer's data. BMC Genomics. 2014 Apr 14;15(1):282. PMID: 24731236

Balasubramanian JB, Visweswaran S, Cooper GF, Gopalakrishnan V. Selective model averaging with Bayesian rule learning for predictive biomedicine. In: Proceedings of the 2014 AMIA Summit on Translational Bioinformatics (Apr 2014).

Bhavnani SK, Dang B, Caro M, Bellala G, Visweswaran S, Asuncion M, Divekar R. Heterogeneity within and across pediatric pulmonary infections: From bipartite networks to at-risk subphenotypes. In: Proceedings of the 2014 AMIA Summit on Translational Bioinformatics (Apr 2014).

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