Songjian Lu, PhD

S. Lu, C. Cai,  G. Yan,  Z. Zhou, Y. Wan, L. Chen, V. Chen, G. Cooper, L. Obeid, Y. Hannun, A. Lee and X. Lu. Signal-oriented pathway analyses reveal a signaling complex as a synthetic lethal target for p53 mutations, Cancer Research 2016, Minor revision

Lu, S., Mandava, G., Yan, G., and Lu, X (2016) An exact algorithm for finding cancer driver somatic genome alterations: the weighted mutually exclusive maximum set cover problem.  Algorithm for Molecular Biology 11:1, DOI: 10.1186/s13015-016-0073-9   PMCID: PMC4855522

Lu, S., Lu, KN, Cheng, S., Ma, X., Nystrom, N., Lu, X. (2015) Identifying driver genomic alterations in cancers by searching minimum-weight, mutually exclusive sets.  PLoS Computational Biology 11(8):e1004257 PMID: 26317392  PMCID: PMC4552843

Lu, S., Jin, B., Cowart, LA., and Lu, X (2013) From data towards knowledge: Revealing the architecture of signaling systems by unifying knowledge mining and data mining of systematic perturbation data. PLoS One 8(4): e61134  PMID: 23637789 PMCID: PMC3634064

Montefusco DJ, Chen L, Matmati N, Lu S, Newcomb B, Cooper GF, Hannun YA, Lu X. Distinct signaling roles of ceramide species in yeast revealed through systematic perturbation and systems biology analyses.  Science Signaling 6(299), rs14. [DOI: 10.1126/scisignal.2004515] (2013)  PMID: 24170935 PMC3974757

J. Chen, J. Kneis, S. Lu, D. Mölle, S. Richter, P. Rossmanith, S.  Sze, F. Zhang. Randomized divide-and-Conquer: Improved path, matching, and packing algorithm. SIAM Journal on Computing. 2009; 38 (6):2526-2547.

J. Chen, S. Lu. Improved Parameterized Set Splitting Problem: A Probabilistic Approach. Algorithmica. 2009; 54 (4):472-489.

J. Chen, Y. Liu, S. Lu, B. O’Sullivan, I. Razgon. A Fixed-Parameter Algorithm for the Directed Feedback Vertex Set Problem. Journal of the ACM. 2008; 55 (5):21.

J. Chen, S. Lu, S. Sze, F. Zhang. Improved Algorithms for Path, Matching, and Packing Problems. In: Proc SODA 2007. 18th Annual ACM-SIAM Symposium on Discrete Algorithms (SODA); 2007 Jan 7-9; New Orleans, Louisiana. 298-307.

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