DBMI Publications

Integration of a touchscreen system for patient registration and primary care data collection with OpenMRS at Neno district hospital, Malawi

Waters E, Rafter J, Maganga RT, Fraser HSF, Douglas GP, et al. Integration of a touchscreen system for patient registration and primary care data collection with OpenMRS at Neno district hospital, Malawi. AMIA Annu Symp Proc 2009;107.

Certified nursing assistants’ perceptions of nursing home patient safety culture: Is there a relationship to clinical or workforce outcomes?

Bonner AF, Castle NG, Men A, Handler SM. Certified nursing assistants’ perceptions of nursing home patient safety culture: Is there a relationship to clinical or workforce outcomes? Journal of the American Medical Directors Association. 2009;10(1):11-20.PMID:19111848  PMCID:  PMC Journal – In process.

Functional MRI detection of deception after committing a mock sabotage crime

Kozel, FA.,  Johnson, KA., Grenesko,EL., Laken, SJ., Kose, S, Lu, X., Pollina, D., Ryan, A and George, MS (2009) Functional MRI detection of deception after committing a mock sabotage crime.  J. Forensic Sciences, 54(1):220-31. PMID: 19067772

Music therapy may reduce pain and anxiety in children undergoing medical and dental procedures

Bekhuis T. Music therapy may reduce pain and anxiety in children undergoing medical and dental procedures [invited evaluation of a systematic review]. Journal of Evidence-based Dental Practice, 2009, 9(4), 213-14. DOI:10.1016/j.jebdp.2009.03.002. PMCID: 2778574

Interventions for treating ameloblastomas of the jaws

Bekhuis T, Thyvalikakath T, Oliver R. Interventions for treating ameloblastomas of the jaws [protocol]. Cochrane Database of Systematic Reviews, 2009, Issue 4. Art. No.: CD003975. DOI: 1002/14651858.CD003975.pub2.

DAVID Query: Retrieval from the DAVID bioinformatics data resource into R

Day RS.  DAVID Query: Retrieval from the DAVID bioinformatics data resource into R.  R package version 1.1.10.  Bioconductor Release 2.4. (2009).  Available at: http://www.bioconductor.org/packages/bioc/html/DAVIDQuery.html

MALDI-TOF Profiling of Breast Cancer Sera for Pattern Analysis

Kolli, V. S. K., Seth, B., Weaver, L., Lustgarten, J. L., Gopalakrishnan, V., Malehorn, D.,  Bigbee, B, Mural, R. J., Shriver, C.D. MALDI-TOF Profiling of Breast Cancer Sera for Pattern Analysis. Human Proteome Organization HUPO 2009  Proceedings.

Potentially Inappropriate Prescribing of Primarily Renally Cleared Medications for Older Veterans Affairs Nursing Home Patients

Hanlon JT, Wang X, Handler SM, Weisbord S, Pugh MJ, Semla T, Stone RA, Aspinall SL. Potentially Inappropriate Prescribing of Primarily Renally Cleared Medications for Older Veterans Affairs Nursing Home Patients. Journal of the American Medical Director’s Association. (in press).

Enhancing GO-graph-based multi-label classification using semantic-rich GO terms

Jin*, B and Lu, X (2009) Enhancing GO-graph-based multi-label classification using semantic-rich GO terms.   Proceedings of the Annual Meeting of the ISMB BioLINK Workshop 2009

Application of semantic modeling in bioinformatics domain

Zheng*, B. and Lu, X (2009) Application of semantic modeling in bioinformatics domain.  In: Data Management in Semantic Web, Ed. Jin, H. and Lv, Z,.  Nova Science Publishers, Inc.

Evaluation of Two Spatial Algorithms for Detection of Disease Outbreaks in Two States

Que J., and Tsui F.-C. Evaluation of Two Spatial Algorithms for Detection of Disease Outbreaks in Two States,  AMIA Annu Symp Proc. 2009(in press).

Towards a data sharing culture: Recommendations for leadership from Academic Health Centers

Piwowar H.A.; Becich M.J.; Bilofsky H.; and Crowley R.S. on behalf of the caBIGTM Data Sharing and Intellectual Capital (DSIC) Workspace .  Towards a data sharing culture: Recommendations for leadership from Academic Health Centers  PLos Medicine 2008, Sept. 2;5(9):e183. PMID: 18767901

Towards a data sharing culture: Recommendations for leadership from Academic Health Centers

Piwowar H, Becich MJ, Bilofsky H, Crowley RS. Towards a data sharing culture: Recommendations for leadership from Academic Health Centers, PLoS Med. 2008 Sep 2;5(9):e183, PMCID: PMC2528049.

National Mesothelioma Virtual Bank: a standard based biospecimen and clinical data resource to enhance translational research.

Amin W, Parwani AV, Schmandt L, Mohanty SK, Farhat G, Pople AK, Winters SB, Whelan NB, Schneider AM, Milnes JT, Valdivieso FA, Feldman M, Pass HI, Dhir R, Melamed J, Becich MJ. National Mesothelioma Virtual Bank: a standard based biospecimen and clinical data resource to enhance translational research. BMC Cancer. 2008 Aug 13;8(1):236. PMID: 18700971 [PubMed - as supplied by publisher] [Epub ahead of print].

Evaluation of preprocessing techniques for chief complaint classification

Dara J, Dowling JN, Travers D, Cooper GF, Chapman WW. Evaluation of preprocessing techniques for chief complaint classification, Journal of Biomedical Informatics;41(4):612-23 (2008).  PMID: 18166502.

Open-source Collaboration in Practice between RODS, NCPHI Research Lab, University of Edinburgh and Tarrant County Public Health

Espino J., Hall K., White P., Washington D., Grant A., Hume A., Antonioletti M., Krause A., Jackson M., Tsui F.-C. and Heinbaugh W., Open-source Collaboration in Practice between RODS, NCPHI Research Lab, University of Edinburgh and Tarrant County Public Health,  2008 Aug. 24-28 PHIN Conference, Atlanta, GA.

Using gaze-tracking data and mixture distribution analysis to support a holistic model for the detection of cancers on mammograms

Kundel HL, Nodine CF, Krupinski EA, Mello-Thoms C. Using gaze-tracking data and mixture distribution analysis to support a holistic model for the detection of cancers on mammograms. Academic Radiology 2008; 15:881-886.

Improving peptide identification via validation with intensity-based modeling of tandem mass spectra

Grover, H, Lustgarten, JL, Visweswaran, S, Gopalakrishnan, V. Improving peptide identification via validation with intensity-based modeling of tandem mass spectra. In: Proceedings of the International Conference on Bioinformatics, Computational Biology, Genomics and Chemoinformatics (BCBGC-08) (July 2008).

An evaluation of discretization methods for learning rules from biomedical datasets

Lustgarten, JL, Visweswaran, S, Grover, H, Gopalakrishnan, V. An evaluation of discretization methods for learning rules from biomedical datasets. In: Proceedings of the International Conference on Bioinformatics and Computational Biology (BIOCOMP-08) (July 2008).

Conditional anomaly detection methods for patient–management alert systems

Valko, M, Cooper, GF, Seybert, A, Visweswaran, S, Saul, M, Hauskrecht M. Conditional anomaly detection methods for patient–management alert systems. In: Workshop on Machine Learning in Health Care Applications in The Twenty-Fifth International Conference on Machine Learning (ICML 2008 - MLHealth) (July 2008).

Temporal Annotation of Clinical Text

D. Mowery, H. Harkema, W. Chapman. Temporal Annotation of Clinical Text. In: Proceedings of BioNLP 2008 Workshop: Current Trends in Biomedical Natural Language Processing, 46th Annual Meeting of the Association for Computational Linguistics.  Columbus, OH. 2008, pp 106-107.

Consensus list of signals to detect potential adverse drug reactions in nursing homes

Handler SM, Hanlon JT, Perera S, Roumani YF, Nace DA, Fridsma DB, Saul MI, Castle NG, Studenski SA. Consensus list of signals to detect potential adverse drug reactions in nursing homes. Journal of American Geriatric Society 2008 May; 56(5):808-15. PMID: 18363678

Frequency of laboratory monitoring of chronic medications administered to nursing facility residents: results of a national internet-based study.

Handler SM, Shirts BH, Perera S, Becich MJ, Castle NG, Hanlon JT. Frequency of laboratory monitoring of chronic medications administered to nursing facility residents: results of a national internet-based study. Consult Pharm. 2008 May;23(5):387-95. PMID: 18540792

Frequency of laboratory monitoring of chronic medications administered to nursing home residents

Handler SM, Shirts BH, Perera S, Studenski SA, Becich MJ, Castle NG, Hanlon JT. Frequency of laboratory monitoring of chronic medications administered to nursing home residents: Results of a national Internet-based study. The Consultant Pharmacist. 2008;23(5):387-95. PMID:18540792  PMCID:PMC2597281

The development and deployment of Common Data Elements for tissue banks for translational research in cancer

Mohanty SK, Mistry AT, Amin W, Parwani AV, Pople AK, Schmandt L, Winters SB, Milliken E, Kim P, Whelan NB, Farhat G, Melamed J, Taioli E, Dhir R, Pass HI, Becich MJ. The development and deployment of Common Data Elements for tissue banks for translational research in cancer - an emerging standard based approach for the Mesothelioma Virtual Tissue Bank. BMC Cancer. 2008 Apr 8;8:91. PMID: 18397527