Genomic and Proteomic Data: Analysis and Data Mining

Vanathi Gopalakrishnan, PhD is exploring the application of technology to the analysis of datasets from biological studies. She is fundamentally interested in technologies for data mining and discovery that allow incorporation of prior knowledge.

Bill Shirey

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Shirey, Bill
Room 429
5607 Baum Blvd
Pittsburgh, PA 15206
412-648-7499

Software Design/Development

Michele Morris

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Morris, Michele
Room 437J
5607 Baum Boulevard
Pittsburgh, PA 15206
412-648-7575

Senior Software Architect

Olga Medvedeva

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Medvedeva, Olga
Room 434E
5607 Baum Boulevard
Pittsburgh, PA 15206
412-624-9089

Software Design/Development

Cleat Szczepaniak

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Szczepaniak, Cleat
416
5607 Baum Blvd
412-648-9213
Administrative Director and NRDM Program Manager, RODS Laboratory
Administrative Director of the Center for Causal Discovery

Rob Cecchetti

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Cecchetti, Rob
Room 412
5607 Baum Boulevard
Pittsburgh, PA 15206
412-648-9134
Executive Administrator
Department of Biomedical Informatics
University of Pittsburgh School of Medicine

Lucy Cafeo

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Cafeo, Lucy
Room 417F
5607 Baum Boulevard
Pittsburgh, PA 15206
412-624-8969

Administrative Support Staff

Charles Borromeo

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Borromeo, Charles
Room 437F
5607 Baum Boulevard
Pittsburgh, PA 15206
412-648-7898

Software Design/Development

Publications: 

McMurry JA, Köhler S, Washington NL, Balhoff JP, Borromeo C, Brush M, Carbon S, Conlin T, Dunn N, Engelstad M, Foster E, Gourdine JP, Jacobsen JO, Keith D, Laraway B, Xuan JN, Shefchek K, Vasilevsky NA, Yuan Z, Lewis SE, Hochheiser H, Groza T, Smedley D, Robinson PN, Mungall CJ, Haendel MA. Navigating the Phenotype Frontier: The Monarch Initiative. Genetics. 2016 Aug;203(4):1491-5. PMID: 27516611 PMCID: PMC4981258.

Amin W, Tsui FC, Borromeo C, Chang CH, Espino JU, Ford D, Hwang W, Kapoor W, Lehmann H, Martich GD, Morton S, Paranjape A, Shirey W, Sorensen A, Becich MJ, Hess R. PaTH: towards a learning health system in the Mid-Atlantic region. J Am Med Inform Assoc. 2014;21(4):63-6 doi: 10.1136/amiajnl-2014-002759. Epub 2014 May 12. PMID: 24821745. PMCID: PMC4078296.

Brinkley, J. F., Borromeo, C., Clarkson, M., Cox, T. C., Cunningham, M. J., Detwiler, L. T., … Shapiro, L. G. (2013). The Ontology of Craniofacial Development and Malformation for translational craniofacial research. American Journal of Medical Genetics. Part C, Seminars in Medical Genetics, 0(4), 232–245. http://doi.org/10.1002/ajmg.c.31377 PMID: 24124010 PMCID: PMC4041627

Thankam Thyvalikakath, MDS, MS, DMD, PhD

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Thyvalikakath, Thankam
1121 W Michigan St
Indianapolis
IN
46202
317-274-5460

Associate Professor, Dental Informatics/Restorative Dentistry, School of Dental Medicine, Indiana University-Purdue University Indianapolis

Heiko Spallek, PhD, DMD, MSBA

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Associate Professor
Sydney, Australia
+61 2 88214364
hspallek
Professor, Pro-Dean Faculty of Dentistry
Westmead Hospital
The University of Sydney
Publications: 

Stein CD, Eisenberg ES, O'Donnell JA, Spallek H. What dental educators need to understand about emerging technologies to incorporate them effectively into the educational process. J Dent Educ. 2014 Apr;78(4):520-9. PubMed PMID: 24706681

Song MO’Donnell JABekhuis TSpallek H, Are dentists interested in the oral-systemic disease connection? A qualitative study of an online community of 450 practitioners.BMC Oral Health. 2013 Nov 21;13:65. doi: 10.1186/1472-6831-13-65.

Bekhuis TKreinacke MSpallek HSong MO’Donnell JA. Using natural language processing to enable in-depth analysis of clinical messages posted to an Internet mailing list: a feasibility study. J Med Internet Res. 2011 Nov 23;13(4):e98. doi: 10.2196/jmir.1799.

 
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